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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Identifying SARS-CoV-2 regional introductions and transmission clusters in real time
Jakob McBroome, Jennifer Martin, Adriano de Bernardi Schneider, et al.
Virus Evolution (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 20

Showing 20 citing articles:

Taxonium, a web-based tool for exploring large phylogenetic trees
Theo Sanderson
eLife (2022) Vol. 11
Open Access | Times Cited: 45
Maximum likelihood pandemic-scale phylogenetics
Nicola De Maio, Prabhav Kalaghatgi, Yatish Turakhia, et al.
Nature Genetics (2023) Vol. 55, Iss. 5, pp. 746-752
Open Access | Times Cited: 37
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2
Cheng Ye, Bryan Thornlow, Angie S. Hinrichs, et al.
Bioinformatics (2022) Vol. 38, Iss. 15, pp. 3734-3740
Open Access | Times Cited: 27
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny
Martin Hunt, Angie S. Hinrichs, D.P. Anderson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Real Time Mapping Of Epidemic Spread
B R Yogeetha
INTERANTIONAL JOURNAL OF SCIENTIFIC RESEARCH IN ENGINEERING AND MANAGEMENT (2025) Vol. 09, Iss. 01, pp. 1-9
Closed Access
Genomics-informed outbreak investigations of SARS-CoV-2 using civet
Áine O’Toole, Verity Hill, Ben Jackson, et al.
PLOS Global Public Health (2022) Vol. 2, Iss. 12, pp. e0000704-e0000704
Open Access | Times Cited: 15
Maximum likelihood pandemic-scale phylogenetics
Nicola De Maio, Prabhav Kalaghatgi, Yatish Turakhia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 10
The ongoing evolution of UShER during the SARS-CoV-2 pandemic
Angie S. Hinrichs, Cheng Ye, Yatish Turakhia, et al.
Nature Genetics (2023) Vol. 56, Iss. 1, pp. 4-7
Closed Access | Times Cited: 5
Variational Phylodynamic Inference Using Pandemic-scale Data
Caleb Ki, Jonathan Terhorst
Molecular Biology and Evolution (2022) Vol. 39, Iss. 8
Open Access | Times Cited: 8
Web Resources for SARS-CoV-2 Genomic Database, Annotation, Analysis and Variant Tracking
Ye‐Xiao Cheng, Chengyang Ji, Hangyu Zhou, et al.
Viruses (2023) Vol. 15, Iss. 5, pp. 1158-1158
Open Access | Times Cited: 4
Optimizing ancestral trait reconstruction of large HIV Subtype C datasets through multiple-trait subsampling
Xingguang Li, Nídia S. Trovão, Joel O. Wertheim, et al.
Virus Evolution (2023) Vol. 9, Iss. 2
Open Access | Times Cited: 3
Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2
Sravani Nanduri, Allison Black, Trevor Bedford, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Computational tools and databases at the forefront to study geographic and genomic distribution of SARS-CoV-2 variants
Aarif Ali, Bashir Ahmad Malla, Showkat Ahmad Ganie, et al.
Network Modeling Analysis in Health Informatics and Bioinformatics (2024) Vol. 13, Iss. 1
Closed Access
Large-scale genomic analysis of SARS-CoV-2 Omicron BA.5 emergence in the United States
Kien Pham, Chrispin Chaguza, Rafael Lopes Paixão da Silva, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
SARS-CoV-2 Genomic Epidemiology Dashboards: A Review of Functionality and Technological Frameworks for the Public Health Response
Nikita Sitharam, Houriiyah Tegally, Danilo de Castro Silva, et al.
Genes (2024) Vol. 15, Iss. 7, pp. 876-876
Open Access
Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2
Sravani Nanduri, Allison Black, Trevor Bedford, et al.
Virus Evolution (2024) Vol. 10, Iss. 1
Open Access
SARS-CoV-2 introductions to the island of Ireland: a phylogenetic and geospatiotemporal study of infection dynamics
Alan M. Rice, Evan P. Troendle, Stephen Bridgett, et al.
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access
SARS-CoV-2 introductions to the island of Ireland
Alan M. Rice, Evan P. Troendle, Stephen Bridgett, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Genomic surveillance identifies potential risk factors for SARS-CoV-2 transmission at a mid-sized university in a small rural town
Kimberly R. Andrews, Daniel D. New, Digpal Singh Gour, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 1
Variational phylodynamic inference using pandemic-scale data
Caleb Ki, Jonathan Terhorst
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 2
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