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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

MGnify: the microbiome analysis resource in 2020
Alex Mitchell, Alexandre Almeida, Martín Beracochea, et al.
Nucleic Acids Research (2019)
Open Access | Times Cited: 507

Showing 1-25 of 507 citing articles:

Highly accurate protein structure prediction with AlphaFold
John Jumper, Richard Evans, Alexander Pritzel, et al.
Nature (2021) Vol. 596, Iss. 7873, pp. 583-589
Open Access | Times Cited: 30308
ColabFold: making protein folding accessible to all
Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki, et al.
Nature Methods (2022) Vol. 19, Iss. 6, pp. 679-682
Open Access | Times Cited: 6554
Pfam: The protein families database in 2021
Jaina Mistry, Sara Chuguransky, Lowri Williams, et al.
Nucleic Acids Research (2020) Vol. 49, Iss. D1, pp. D412-D419
Open Access | Times Cited: 5588
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Yasset Pérez‐Riverol, Jingwen Bai, Chakradhar Bandla, et al.
Nucleic Acids Research (2021) Vol. 50, Iss. D1, pp. D543-D552
Open Access | Times Cited: 4920
Protein complex prediction with AlphaFold-Multimer
Richard Evans, M. E. O’Neill, Alexander Pritzel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 2903
Evolutionary-scale prediction of atomic-level protein structure with a language model
Zeming Lin, Halil Akin, Roshan Rao, et al.
Science (2023) Vol. 379, Iss. 6637, pp. 1123-1130
Open Access | Times Cited: 2079
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
Donovan H. Parks, Maria Chuvochina, Christian Rinke, et al.
Nucleic Acids Research (2021) Vol. 50, Iss. D1, pp. D785-D794
Open Access | Times Cited: 1306
PANTHER : Making genome‐scale phylogenetics accessible to all
Paul D. Thomas, Dustin Ebert, Anushya Muruganujan, et al.
Protein Science (2021) Vol. 31, Iss. 1, pp. 8-22
Open Access | Times Cited: 1192
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Stephen Nayfach, Antônio Pedro Camargo, Frederik Schulz, et al.
Nature Biotechnology (2020) Vol. 39, Iss. 5, pp. 578-585
Open Access | Times Cited: 1025
A unified catalog of 204,938 reference genomes from the human gut microbiome
Alexandre Almeida, Stephen Nayfach, Miguel Boland, et al.
Nature Biotechnology (2020) Vol. 39, Iss. 1, pp. 105-114
Open Access | Times Cited: 968
Accurate proteome-wide missense variant effect prediction with AlphaMissense
Jun Cheng, Guido Novati, Joshua Pan, et al.
Science (2023) Vol. 381, Iss. 6664
Open Access | Times Cited: 797
Improved prediction of protein-protein interactions using AlphaFold2
Patrick Bryant, Gabriele Pozzati, Arne Elofsson
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 694
A practical guide to amplicon and metagenomic analysis of microbiome data
Yongxin Liu, Yuan Qin, Tong Chen, et al.
Protein & Cell (2020) Vol. 12, Iss. 5, pp. 315-330
Open Access | Times Cited: 609
Using machine learning approaches for multi-omics data analysis: A review
Parminder Singh Reel, Smarti Reel, Ewan R. Pearson, et al.
Biotechnology Advances (2021) Vol. 49, pp. 107739-107739
Open Access | Times Cited: 511
The ProteomeXchange consortium at 10 years: 2023 update
Eric W. Deutsch, Nuno Bandeira, Yasset Pérez‐Riverol, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D1539-D1548
Open Access | Times Cited: 447
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
Stephen Nayfach, David Páez-Espino, Lee Call, et al.
Nature Microbiology (2021) Vol. 6, Iss. 7, pp. 960-970
Open Access | Times Cited: 401
Petabase-scale sequence alignment catalyses viral discovery
R. C. Edgar, Brie Taylor, Victor S.-Y. Lin, et al.
Nature (2022) Vol. 602, Iss. 7895, pp. 142-147
Open Access | Times Cited: 378
I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction
Xiaogen Zhou, Wei Zheng, Yang Li, et al.
Nature Protocols (2022) Vol. 17, Iss. 10, pp. 2326-2353
Closed Access | Times Cited: 311
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
Andrew Yates, James E. Allen, Ridwan Amode, et al.
Nucleic Acids Research (2021) Vol. 50, Iss. D1, pp. D996-D1003
Open Access | Times Cited: 261
Evolutionary-scale prediction of atomic level protein structure with a language model
Zeming Lin, Halil Akin, Roshan Rao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 256
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Laura Judith Marcos-Zambrano, Kanita Karađuzović-Hadžiabdić, Tatjana Lončar-Turukalo, et al.
Frontiers in Microbiology (2021) Vol. 12
Open Access | Times Cited: 245
AlphaFold2 and its applications in the fields of biology and medicine
Zhenyu Yang, Xiaoxi Zeng, Yi Zhao, et al.
Signal Transduction and Targeted Therapy (2023) Vol. 8, Iss. 1
Open Access | Times Cited: 235
Protein structure predictions to atomic accuracy with AlphaFold
John Jumper, Demis Hassabis
Nature Methods (2022) Vol. 19, Iss. 1, pp. 11-12
Closed Access | Times Cited: 224
AF2Complex predicts direct physical interactions in multimeric proteins with deep learning
Mu Gao, Davi Nakajima An, Jerry M. Parks, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 218
The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health
Francesca De Filippis, Edoardo Pasolli, Danilo Ercolini
FEMS Microbiology Reviews (2020) Vol. 44, Iss. 4, pp. 454-489
Open Access | Times Cited: 206
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