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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
Antônio Pedro Camargo, Lee Call, Simon Roux, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D164-D173
Open Access | Times Cited: 27

Showing 1-25 of 27 citing articles:

Sequence modeling and design from molecular to genome scale with Evo
Éric Nguyen, Michael Poli, Matthew G. Durrant, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 50
Sequence modeling and design from molecular to genome scale with Evo
Eric N. D. Nguyen, Michael Poli, Matthew G. Durrant, et al.
Science (2024) Vol. 386, Iss. 6723
Open Access | Times Cited: 33
Design of highly functional genome editors by modeling the universe of CRISPR-Cas sequences
Jeffrey A. Ruffolo, Stephen Nayfach, Joseph P. Gallagher, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 26
Engineering of CRISPR-Cas PAM recognition using deep learning of vast evolutionary data
Stephen Nayfach, Aadyot Bhatnagar, Andrey Novichkov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Genetic and species rearrangements in microbial consortia impact biodegradation potential
Zaki Saati‐Santamaría, Pilar Navarro‐Gómez, Juan A Martínez-Mancebo, et al.
The ISME Journal (2025)
Closed Access
The OMG dataset: An Open MetaGenomic corpus for mixed-modality genomic language modeling
Andre Cornman, Jacob West-Roberts, Antônio Pedro Camargo, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Beav: a bacterial genome and mobile element annotation pipeline
Jewell M. Jung, Arafat Rahman, A. Schiffer, et al.
mSphere (2024) Vol. 9, Iss. 8
Open Access | Times Cited: 3
Insights into the ecology of the infant gut plasmidome
Wanli He, Jakob Russel, Franziska Klincke, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Modern microbiology: Embracing complexity through integration across scales
A. Murat Eren, Jillian F. Banfield
Cell (2024) Vol. 187, Iss. 19, pp. 5151-5170
Open Access | Times Cited: 3
Dynamics of CRISPR-mediated virus–host interactions in the human gut microbiome
Adrián López-Beltrán, João Botelho, Jaime Iranzo
The ISME Journal (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 2
Systematic annotation of hyper-variability hotspots in phage genomes and plasmids
Artyom A. Egorov, Vasili Hauryliuk, Gemma C. Atkinson
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools
Yinhu Li, Xikang Feng, Xuhua Chen, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D179-D188
Open Access | Times Cited: 2
Dynamics of CRISPR-mediated virus-host interactions in the human gut microbiome
Adrián López-Beltrán, João Botelho, Jaime Iranzo
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Beav: A bacterial genome and mobile element annotation pipeline
Jewell M. Jung, Arafat Rahman, A. Schiffer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
PIPdb: a comprehensive plasmid sequence resource for tracking the horizontal transfer of pathogenic factors and antimicrobial resistance genes
Qianhui Zhu, Qi Chen, Shenghan Gao, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D169-D178
Open Access | Times Cited: 1
The PLSDB 2025 update: enhanced annotations and improved functionality for comprehensive plasmid research
Leidy-Alejandra G Molano, Pascal Hirsch, Matthias Hannig, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D189-D196
Open Access | Times Cited: 1
CRISPR Spacers Acquired from Plasmids Primarily Target Backbone Genes, Making Them Valuable for Predicting Potential Hosts and Host Range
Lucy Androsiuk, Sivan Maane, S. Tal
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Pangenomics to understand prophage dynamics in the Pectobacterium genus and the radiating lineages of P. brasiliense
Lakhansing Pardeshi, Inge van Duivenbode, Michiel J. C. Pel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
CRISPR spacers acquired from plasmids primarily target backbone genes, making them valuable for predicting potential hosts and host range
Lucy Androsiuk, Sivan Maane, S. Tal
Microbiology Spectrum (2024)
Open Access
A method to detect origin of transfer sequences for plasmid conjugation

Nature Microbiology (2024) Vol. 9, Iss. 12, pp. 3095-3096
Closed Access
PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure
Yongxin Ji, Jiayu Shang, Jiaojiao Guan, et al.
GigaScience (2024) Vol. 13
Open Access
Bioinformatic tool development and application to the human gut microbiome
Alexei Chklovski
(2024)
Open Access
Piece and parcel of gymnosperm organellar genomes
Acga Cheng, Najiah Mohd Sadali, Nur Ardiyana Rejab, et al.
Planta (2024) Vol. 260, Iss. 1
Closed Access
skandiver: a divergence-based analysis tool for identifying intercellular mobile genetic elements
Xiaolei Brian Zhang, Grace Oualline, Jim Shaw, et al.
Bioinformatics (2024) Vol. 40, Iss. Supplement_2, pp. ii155-ii164
Open Access
Dynamics and determinants of the gut mobilome in early life
Asier Fernández-Pato, Trishla Sinha, Sanzhima Garmaeva, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
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