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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

DDMut: predicting effects of mutations on protein stability using deep learning
Yunzhuo Zhou, Qisheng Pan, Douglas E. V. Pires, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W122-W128
Open Access | Times Cited: 98

Showing 1-25 of 98 citing articles:

Structure-based self-supervised learning enables ultrafast protein stability prediction upon mutation
Jinyuan Sun, Tong Zhu, Yinglu Cui, et al.
The Innovation (2025) Vol. 6, Iss. 1, pp. 100750-100750
Open Access | Times Cited: 1
Site-saturation mutagenesis of 500 human protein domains
Antoni Beltran, Xuege Jiang, Yue Shen, et al.
Nature (2025)
Open Access | Times Cited: 1
FireProt 2.0: web-based platform for the fully automated design of thermostable proteins
Miloš Musil, Andrej Jezik, Jana Horackova, et al.
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 22
ProSTAGE: Predicting Effects of Mutations on Protein Stability by Using Protein Embeddings and Graph Convolutional Networks
Gen Li, Sijie Yao, Long Fan
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 2, pp. 340-347
Open Access | Times Cited: 11
Cross-population applications of genomics to understand the risk of multifactorial traits involving inflammation and immunity
Bana Alamad, Kate Elliott, Julian C. Knight
Cambridge Prisms Precision Medicine (2024) Vol. 2
Open Access | Times Cited: 11
Biophysics-based protein language models for protein engineering
Sam Gelman, Bryce Johnson, Chase R. Freschlin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
Site saturation mutagenesis of 500 human protein domains reveals the contribution of protein destabilization to genetic disease
Antoni Beltran, Xuege Jiang, Yue Shen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
Biallelic variants in CSMD1 are implicated in a neurodevelopmental disorder with intellectual disability and variable cortical malformations
Elizabeth A. Werren, Emily Peirent, Henna Jäntti, et al.
Cell Death and Disease (2024) Vol. 15, Iss. 5
Open Access | Times Cited: 7
Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification
Jayoung Ryu, Sam Barkal, Tian Yu, et al.
Nature Genetics (2024) Vol. 56, Iss. 5, pp. 925-937
Closed Access | Times Cited: 6
DDMut-PPI: predicting effects of mutations on protein–protein interactions using graph-based deep learning
Yunzhuo Zhou, Yoochan Myung, Carlos H. M. Rodrigues, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. W1, pp. W207-W214
Open Access | Times Cited: 6
An end-to-end framework for the prediction of protein structure and fitness from single sequence
Yinghui Chen, Yunxin Xu, Ди Лю, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
Structural Dynamics of Neutral Amino Acid Transporter SLC6A19 in Simple and Complex Lipid Bilayers
Budheswar Dehury, Sarbani Mishra, Sunita Panda, et al.
Journal of Cellular Biochemistry (2025) Vol. 126, Iss. 1
Open Access
Computational identification of novel natural inhibitors against triple mutant DNA gyrase A in fluoroquinolone-resistant Salmonella Typhimurium
Sree Haryini, C. George Priya Doss
Biochemistry and Biophysics Reports (2025) Vol. 41, pp. 101901-101901
Closed Access
Intracellular protein-lipid interactions drive presynaptic assembly prior to neurexin recruitment
Elisa B. Frankel, Araven Tiroumalechetty, Zhaoqian Su, et al.
Neuron (2025)
Closed Access
Evolution and spread of Xanthomonas citri subsp. citri in the São Paulo, Brazil, citrus belt inferred from 758 novel genomes
Caio Felipe Cavicchia Zamunér, Dennis Carhuaricra-Huaman, Roobinidevi Ragupathy, et al.
Microbial Genomics (2025) Vol. 11, Iss. 1
Open Access
Codeine 3-O-demethylase catalyzed biotransformation of morphinan alkaloids in Escherichia coli: site directed mutagenesis of terminal residues improves enzyme expression, stability and biotransformation yield
Garrick W. K. Spencer, Xu Li, Kwok‐Wai Lam, et al.
Journal of Biological Engineering (2025) Vol. 19, Iss. 1
Open Access
Impact of frequent ARID1A mutations on protein stability provides insights into cancer pathogenesis
Rajen Goutam, Gangtong Huang, Exequiel Medina, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
An augmented transformer model trained on protein family specific variant data leads to improved prediction of variants of uncertain significance
Dinesh Joshi, Swatantra Pradhan, Rakshanda Sajeed, et al.
Human Genetics (2025)
Closed Access
Arsenic efflux and bioremediation potential of Klebsiella oxytoca via the arsB gene
Sana Waqar, Aamira Tariq, Ubaid Ullah, et al.
PLoS ONE (2025) Vol. 20, Iss. 1, pp. e0307918-e0307918
Open Access
Predicting the impact of missense mutations on an unresolved protein’s stability, structure, and function: A case study of Alzheimer’s disease‐associated TREM2 R47H variant
Joshua Pillai, Kijung Sung, Chengbiao Wu
Computational and Structural Biotechnology Journal (2025)
Open Access
A mutation in RNA polymerase imparts resistance to β-lactams by preventing dysregulation of amino acid and nucleotide metabolism
Yesha Patel, John D. Helmann
Cell Reports (2025) Vol. 44, Iss. 2, pp. 115268-115268
Open Access
PROSTATA: a framework for protein stability assessment using transformers
Dmitriy Umerenkov, Fedor Nikolaev, Tatiana Shashkova, et al.
Bioinformatics (2023) Vol. 39, Iss. 11
Open Access | Times Cited: 19
Exploring the effects of missense mutations on protein thermodynamics through structure-based approaches: findings from the CAGI6 challenges
Carlos H. M. Rodrigues, Stephanie Portelli, David B. Ascher
Human Genetics (2024)
Open Access | Times Cited: 5
Two more families supporting the existence of monogenic spinocerebellar ataxia 48
Flavia Palombo, Alessandro Vaisfeld, Valentina Concetta Tropeano, et al.
Neurogenetics (2024) Vol. 25, Iss. 3, pp. 277-280
Closed Access | Times Cited: 4
Improving the prediction of protein stability changes upon mutations by geometric learning and a pre-training strategy
Yunxin Xu, Ди Лю, Haipeng Gong
Nature Computational Science (2024) Vol. 4, Iss. 11, pp. 840-850
Closed Access | Times Cited: 4
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