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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

iFeatureOmega:an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets
Zhen Chen, Xuhan Liu, Pei Zhao, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W434-W447
Open Access | Times Cited: 57

Showing 1-25 of 57 citing articles:

DeepBIO: an automated and interpretable deep-learning platform for high-throughput biological sequence prediction, functional annotation and visualization analysis
Ruheng Wang, Yi Jiang, Junru Jin, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 7, pp. 3017-3029
Open Access | Times Cited: 98
Pfeature: A Tool for Computing Wide Range of Protein Features and Building Prediction Models
Akshara Pande, Sumeet Patiyal, Anjali Lathwal, et al.
Journal of Computational Biology (2022) Vol. 30, Iss. 2, pp. 204-222
Closed Access | Times Cited: 59
pLM4ACE: A protein language model based predictor for antihypertensive peptide screening
Zhenjiao Du, Xingjian Ding, William Hsu, et al.
Food Chemistry (2023) Vol. 431, pp. 137162-137162
Open Access | Times Cited: 39
A review of enzyme design in catalytic stability by artificial intelligence
Yongfan Ming, Wenkang Wang, Rui Yin, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 3
Closed Access | Times Cited: 27
GraphormerDTI: A graph transformer-based approach for drug-target interaction prediction
Mengmeng Gao, Daokun Zhang, Yi Chen, et al.
Computers in Biology and Medicine (2024) Vol. 173, pp. 108339-108339
Open Access | Times Cited: 13
ac4C-AFL: A high-precision identification of human mRNA N4-acetylcytidine sites based on adaptive feature representation learning
Nhat Truong Pham, Annie Terrina Terrance, Young-Jun Jeon, et al.
Molecular Therapy — Nucleic Acids (2024) Vol. 35, Iss. 2, pp. 102192-102192
Open Access | Times Cited: 11
A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy
Jiahui Guan, Lantian Yao, Peilin Xie, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 9
DOGpred: A Novel Deep Learning Framework for Accurate Identification of Human O-linked Threonine Glycosylation Sites
Ki Wook Lee, Nhat Truong Pham, Hye Jung Min, et al.
Journal of Molecular Biology (2025), pp. 168977-168977
Closed Access | Times Cited: 1
Advancing the accuracy of SARS-CoV-2 phosphorylation site detection via meta-learning approach
Nhat Truong Pham, Le Thi Phan, Ji-Min Seo, et al.
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 20
ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species
Ruyi Chen, Fuyi Li, Xudong Guo, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 3
Open Access | Times Cited: 17
ADP-Fuse: A novel two-layer machine learning predictor to identify antidiabetic peptides and diabetes types using multiview information
Shaherin Basith, Nhat Truong Pham, Minkyung Song, et al.
Computers in Biology and Medicine (2023) Vol. 165, pp. 107386-107386
Closed Access | Times Cited: 17
Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations
Yue Bi, Fuyi Li, Xudong Guo, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 6
Open Access | Times Cited: 23
Superior protein thermophilicity prediction with protein language model embeddings
Florian Haselbeck, Maura John, Yuqi Zhang, et al.
NAR Genomics and Bioinformatics (2023) Vol. 5, Iss. 4
Open Access | Times Cited: 14
MLAS: Machine Learning-Based Approach for Predicting Abiotic Stress-Responsive Genes in Chinese Cabbage
Xiong You, Yiting Shu, Xi Ni, et al.
Horticulturae (2025) Vol. 11, Iss. 1, pp. 44-44
Open Access
AntiT2DMP-Pred: Leveraging feature fusion and optimization for superior machine learning prediction of type 2 diabetes mellitus
Shaherin Basith, Balachandran Manavalan, Gwang Lee
Methods (2025)
Closed Access
StackDILI: Enhancing Drug-Induced Liver Injury Prediction through Stacking Strategy with Effective Molecular Representations
Jiahui Guan, Danhong Dong, Peilin Xie, et al.
Journal of Chemical Information and Modeling (2025)
Closed Access
A review on computational models for predicting protein solubility
Teerapat Pimtawong, Jun Ren, Jingyu Lee, et al.
The Journal of Microbiology (2025) Vol. 63, Iss. 1, pp. e:2408001-e:2408001
Closed Access
SUMO-LMNet: Lossless Mapping Network for Predicting SUMOylation Sites in SUMO1 and SUMO2 using High-Dimensional Features
Cheng‐Hsun Ho, Yen-Wei Chu, Lan-Ying Huang, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 1048-1059
Open Access
TetraRNA, a tetra-class machine learning model for deciphering the coding potential derivation of RNA world
Hanrui Bai, Jie Wang, Xiaoke Jiang, et al.
Computational and Structural Biotechnology Journal (2025)
Open Access
Computational prediction of phosphorylation sites of SARS-CoV-2 infection using feature fusion and optimization strategies
Mumdooh J. Sabir, Majid Rasool Kamli, Ahmed Atef, et al.
Methods (2024) Vol. 229, pp. 1-8
Closed Access | Times Cited: 4
SEP-AlgPro: An efficient allergen prediction tool utilizing traditional machine learning and deep learning techniques with protein language model features
Shaherin Basith, Nhat Truong Pham, Balachandran Manavalan, et al.
International Journal of Biological Macromolecules (2024) Vol. 273, pp. 133085-133085
Closed Access | Times Cited: 4
Deciphering the functional landscape of phosphosites with deep neural network
Zhongjie Liang, Tonghai Liu, Qi Li, et al.
Cell Reports (2023) Vol. 42, Iss. 9, pp. 113048-113048
Open Access | Times Cited: 9
GPApred: The first computational predictor for identifying proteins with LPXTG-like motif using sequence-based optimal features
Adeel Malik, Watshara Shoombuatong, Chang-Bae Kim, et al.
International Journal of Biological Macromolecules (2022) Vol. 229, pp. 529-538
Open Access | Times Cited: 14
Small molecule-mediated targeting of microRNAs for drug discovery: Experiments, computational techniques, and disease implications
Jianfeng Sun, Miaoer Xu, Jinlong Ru, et al.
European Journal of Medicinal Chemistry (2023) Vol. 257, pp. 115500-115500
Open Access | Times Cited: 8
PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network
Jing Meng, Jingze Liu, Wenkai Song, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 2
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