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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

metaGEM: reconstruction of genome scale metabolic models directly from metagenomes
Francisco Zorrilla, Filip Buric, Kiran Raosaheb Patil, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 21, pp. e126-e126
Open Access | Times Cited: 88

Showing 1-25 of 88 citing articles:

METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
Zhichao Zhou, Patricia Q. Tran, Adam M. Breister, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 348
Ecological modelling approaches for predicting emergent properties in microbial communities
Naomi Iris van den Berg, Daniel Machado, Sophia Santos, et al.
Nature Ecology & Evolution (2022) Vol. 6, Iss. 7, pp. 855-865
Open Access | Times Cited: 133
Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities
Guido Zampieri, Stefano Campanaro, Claudio Angione, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 1, pp. 100383-100383
Open Access | Times Cited: 41
Soil metabolomics - current challenges and future perspectives
Robert W. Brown, Michaela Reay, Florian Centler, et al.
Soil Biology and Biochemistry (2024) Vol. 193, pp. 109382-109382
Open Access | Times Cited: 17
Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
Jan Zrimec, Mariia Kokina, Sara Jonasson, et al.
mBio (2021) Vol. 12, Iss. 5
Open Access | Times Cited: 74
Advances in constraint-based modelling of microbial communities
Almut Heinken, Arianna Basile, Ines Thiele
Current Opinion in Systems Biology (2021) Vol. 27, pp. 100346-100346
Open Access | Times Cited: 58
Modelling microbial communities: Harnessing consortia for biotechnological applications
Maziya Ibrahim, Lavanya Raajaraam, Karthik Raman
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 3892-3907
Open Access | Times Cited: 56
Disease-specific loss of microbial cross-feeding interactions in the human gut
Vanessa R. Marcelino, Caitlin Welsh, Christian Diener, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 26
Microbial interactions shape cheese flavour formation
Chrats Melkonian, Francisco Zorrilla, Inge Kjærbølling, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 21
A focus on different types of organic matter particles and their significance in the open ocean carbon cycle
Chloé Baumas, Mina Bižić
Progress In Oceanography (2024) Vol. 224, pp. 103233-103233
Open Access | Times Cited: 12
Genome-resolved metagenomics: a game changer for microbiome medicine
Nayeon Kim, Junyeong Ma, Wonjong Kim, et al.
Experimental & Molecular Medicine (2024) Vol. 56, Iss. 7, pp. 1501-1512
Open Access | Times Cited: 11
Engineering agricultural soil microbiomes and predicting plant phenotypes
Chiara A. Berruto, Gözde S. Demirer
Trends in Microbiology (2024) Vol. 32, Iss. 9, pp. 858-873
Closed Access | Times Cited: 10
Genome-scale models in human metabologenomics
Adil Mardinoğlu, Bernhard Ø. Palsson
Nature Reviews Genetics (2024)
Closed Access | Times Cited: 9
Deciphering and designing microbial communities by genome-scale metabolic modelling
Shengbo Wu, Zheping Qu, Danlei Chen, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1990-2000
Open Access | Times Cited: 8
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Klara Cerk, Pablo Ugalde‐Salas, Chabname Ghassemi Nedjad, et al.
Microbial Biotechnology (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 7
Advances of high-throughput sequencing for unraveling biotechnological potential of microalgal-bacterial communities
Petr Zaytsev, Владимир Александрович Родин, Anna A. Zaytseva, et al.
Journal of Applied Phycology (2024) Vol. 36, Iss. 4, pp. 1901-1919
Closed Access | Times Cited: 7
Emerging tools and best practices for studying gut microbial community metabolism
Cecilia Noecker, Peter J. Turnbaugh
Nature Metabolism (2024) Vol. 6, Iss. 7, pp. 1225-1236
Closed Access | Times Cited: 7
PredCMB: Predicting changes in microbial metabolites based on the gene-metabolite network analysis of shotgun metagenome data
Jong Dae Ji, Sungwon Jung
Bioinformatics (2025)
Open Access
Modeling and analysis techniques: seed microbiome
Mohammad Yaseen Mir, Javid Ahmad Parray, Saima Hamid, et al.
Elsevier eBooks (2025), pp. 339-357
Closed Access
Toward merging bottom–up and top–down model-based designing of synthetic microbial communities
David San León, Juan Nogales
Current Opinion in Microbiology (2022) Vol. 69, pp. 102169-102169
Closed Access | Times Cited: 34
KEMET – A python tool for KEGG Module evaluation and microbial genome annotation expansion
Matteo Palù, Arianna Basile, Guido Zampieri, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 1481-1486
Open Access | Times Cited: 27
Metabolic engineering of human gut microbiome: Recent developments and future perspectives
Peishun Li, Stefan Roos, Hao Luo, et al.
Metabolic Engineering (2023) Vol. 79, pp. 1-13
Open Access | Times Cited: 15
MIGRENE: The Toolbox for Microbial and Individualized GEMs, Reactobiome and Community Network Modelling
Gholamreza Bidkhori, Saeed Shoaie
Metabolites (2024) Vol. 14, Iss. 3, pp. 132-132
Open Access | Times Cited: 6
Review on computer-assisted biosynthetic capacities elucidation to assess metabolic interactions and communication within microbial communities
Mahnoor Zulfiqar, Vinay Singh, Christoph Steinbeck, et al.
Critical Reviews in Microbiology (2024), pp. 1-40
Open Access | Times Cited: 5
Flux sampling in genome-scale metabolic modeling of microbial communities
Patrick E. Gelbach, Handan Çetin, Stacey D. Finley
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
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