Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations
Tunca Doğan, Heval Ataş, Vishal Joshi, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 16, pp. e96-e96
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

Learning functional properties of proteins with language models
Serbülent Ünsal, Heval Ataş, Muammer Albayrak, et al.
Nature Machine Intelligence (2022) Vol. 4, Iss. 3, pp. 227-245
Closed Access | Times Cited: 134
Democratizing knowledge representation with BioCypher
Sebastian Lobentanzer, Patrick Aloy, Jan Baumbach, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 8, pp. 1056-1059
Open Access | Times Cited: 35
Towards artificial intelligence to multi-omics characterization of tumor heterogeneity in esophageal cancer
Junyu Li, Lin Li, Peimeng You, et al.
Seminars in Cancer Biology (2023) Vol. 91, pp. 35-49
Closed Access | Times Cited: 29
SELFormer: molecular representation learning via SELFIES language models
Atakan Yüksel, Erva Ulusoy, Atabey Ünlü, et al.
Machine Learning Science and Technology (2023) Vol. 4, Iss. 2, pp. 025035-025035
Open Access | Times Cited: 27
Evaluating the advancements in protein language models for encoding strategies in protein function prediction: a comprehensive review
Jiaying Chen, Jingfu Wang, Yue Hu, et al.
Frontiers in Bioengineering and Biotechnology (2025) Vol. 13
Open Access | Times Cited: 1
RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine
E. C. Wood, Amy K. Glen, Lindsey G. Kvarfordt, et al.
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 30
How to approach machine learning-based prediction of drug/compound–target interactions
Heval Ataş, Tunca Doğan
Journal of Cheminformatics (2023) Vol. 15, Iss. 1
Open Access | Times Cited: 19
Exploring the structural and molecular interaction landscape of nirmatrelvir and Mpro complex: The study might assist in designing more potent antivirals targeting SARS-CoV-2 and other viruses
Chiranjib Chakraborty, Manojit Bhattacharya, Abdulrahman Alshammari, et al.
Journal of Infection and Public Health (2023) Vol. 16, Iss. 12, pp. 1961-1970
Open Access | Times Cited: 14
KG-Hub—building and exchanging biological knowledge graphs
J. Harry Caufield, Tim Putman, Kevin Schaper, et al.
Bioinformatics (2023) Vol. 39, Iss. 7
Open Access | Times Cited: 13
Overview and Prospects of DNA Sequence Visualization
Wu Yan, Xiaojun Xie, Jihong Zhu, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 2, pp. 477-477
Open Access
A systematic mapping study of semantic technologies in multi-omics data integration
Giovanni Maria De Filippis, Domenico Amalfitano, Cristiano Russo, et al.
Journal of Biomedical Informatics (2025), pp. 104809-104809
Open Access
Protein language models for predicting drug–target interactions: Novel approaches, emerging methods, and future directions
Atabey Ünlü, Erva Ulusoy, Melih Gökay Yiğit, et al.
Current Opinion in Structural Biology (2025) Vol. 91, pp. 103017-103017
Closed Access
MedKG: enabling drug discovery through a unified biomedical knowledge graph
Manisha Kumari, Rohit Chauhan, Prabha Garg
Molecular Diversity (2025)
Closed Access
Progress on network modeling and analysis of gut microecology: a review
Meng Luo, Jinlin Zhu, Jiajia Jia, et al.
Applied and Environmental Microbiology (2024)
Open Access | Times Cited: 3
Knowledge graphs in psychiatric research: Potential applications and future perspectives
Sebastian Freidel, Emanuel Schwarz
Acta Psychiatrica Scandinavica (2024) Vol. 151, Iss. 3, pp. 180-191
Open Access | Times Cited: 3
A novel gluten knowledge base of potential biomedical and health-related interactions extracted from the literature: Using machine learning and graph analysis methodologies to reconstruct the bibliome
Martín Pérez‐Pérez, Tânia Ferreira, Gilberto Igrejas, et al.
Journal of Biomedical Informatics (2023) Vol. 143, pp. 104398-104398
Open Access | Times Cited: 7
Mutual annotation‐based prediction of protein domain functions with Domain2GO
Erva Ulusoy, Tunca Doğan
Protein Science (2024) Vol. 33, Iss. 6
Open Access | Times Cited: 2
Protein domain-based prediction of drug/compound–target interactions and experimental validation on LIM kinases
Tunca Doğan, Ece Akhan Güzelcan, Marcus Baumann, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 11, pp. e1009171-e1009171
Open Access | Times Cited: 15
NetMe 2.0: a web-based platform for extracting and modeling knowledge from biomedical literature as a labeled graph
Antonio Di Maria, Lorenzo Bellomo, Fabrizio Billeci, et al.
Bioinformatics (2024) Vol. 40, Iss. 5
Open Access | Times Cited: 1
Unlocking biological insights from differentially expressed Genes: Concepts, methods, and future perspectives
Huachun Yin, Hongrui Duo, Li Song, et al.
Journal of Advanced Research (2024)
Open Access | Times Cited: 1
SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins
Gökhan Özsarı, Ahmet Süreyya Rifaioğlu, Ahmet Atakan, et al.
Bioinformatics (2022) Vol. 38, Iss. 17, pp. 4226-4229
Closed Access | Times Cited: 6
Natural Language Processing for Drug Discovery Knowledge Graphs: Promises and Pitfalls
J. Charles G. Jeynes, Tim James, Matthew Corney
Methods in molecular biology (2023), pp. 223-240
Closed Access | Times Cited: 2
A large-scale evaluation of NLP-derived chemical-gene/protein relationships from the scientific literature: Implications for knowledge graph construction
J. Charles G. Jeynes, Matthew Corney, Tim James
PLoS ONE (2023) Vol. 18, Iss. 9, pp. e0291142-e0291142
Open Access | Times Cited: 1
A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease <em>via</em> Biomedical Reports
Alexander R. Pelletier, Dylan Steinecke, Dibakar Sigdel, et al.
Journal of Visualized Experiments (2023), Iss. 200
Closed Access | Times Cited: 1
Machine learning-based prediction of drug approvals using molecular, physicochemical, clinical trial, and patent-related features
Fulya Ciray, Tunca Doğan
Expert Opinion on Drug Discovery (2022) Vol. 17, Iss. 12, pp. 1425-1441
Open Access | Times Cited: 2
Page 1 - Next Page

Scroll to top