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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees
Jakob McBroome, Bryan Thornlow, Angie S. Hinrichs, et al.
Molecular Biology and Evolution (2021) Vol. 38, Iss. 12, pp. 5819-5824
Open Access | Times Cited: 95

Showing 1-25 of 95 citing articles:

The UCSC Genome Browser database: 2023 update
Luis R Nassar, Galt P Barber, Anna Benet‐Pagès, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D1188-D1195
Open Access | Times Cited: 427
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
Smruthi Karthikeyan, Joshua I. Levy, Peter De Hoff, et al.
Nature (2022) Vol. 609, Iss. 7925, pp. 101-108
Open Access | Times Cited: 346
Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
Fritz Obermeyer, Martin Jankowiak, Nikolaos Barkas, et al.
Science (2022) Vol. 376, Iss. 6599, pp. 1327-1332
Open Access | Times Cited: 278
Efficient ancestry and mutation simulation with msprime 1.0
Franz Baumdicker, Gertjan Bisschop, Daniel Goldstein, et al.
Genetics (2021) Vol. 220, Iss. 3
Open Access | Times Cited: 273
Shifting mutational constraints in the SARS-CoV-2 receptor-binding domain during viral evolution
Tyler N. Starr, Allison J. Greaney, William W. Hannon, et al.
Science (2022) Vol. 377, Iss. 6604, pp. 420-424
Open Access | Times Cited: 239
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape
Yatish Turakhia, Bryan Thornlow, Angie S. Hinrichs, et al.
Nature (2022) Vol. 609, Iss. 7929, pp. 994-997
Open Access | Times Cited: 135
A molnupiravir-associated mutational signature in global SARS-CoV-2 genomes
Theo Sanderson, Ryan Hisner, I’ah Donovan-Banfield, et al.
Nature (2023) Vol. 623, Iss. 7987, pp. 594-600
Open Access | Times Cited: 115
Fitness effects of mutations to SARS-CoV-2 proteins
Jesse D. Bloom, Richard A. Neher
Virus Evolution (2023) Vol. 9, Iss. 2
Open Access | Times Cited: 69
Evolution of the SARS-CoV-2 Mutational Spectrum
Jesse D. Bloom, Annabel C. Beichman, Richard A. Neher, et al.
Molecular Biology and Evolution (2023) Vol. 40, Iss. 4
Open Access | Times Cited: 49
The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure
Hugh K. Haddox, Georg Angehrn, Luca Sesta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
Emergence of SARS-CoV-2 subgenomic RNAs that enhance viral fitness and immune evasion
Harriet V Mears, George R. Young, Theo Sanderson, et al.
PLoS Biology (2025) Vol. 23, Iss. 1, pp. e3002982-e3002982
Open Access | Times Cited: 1
Taxonium, a web-based tool for exploring large phylogenetic trees
Theo Sanderson
eLife (2022) Vol. 11
Open Access | Times Cited: 45
Maximum likelihood pandemic-scale phylogenetics
Nicola De Maio, Prabhav Kalaghatgi, Yatish Turakhia, et al.
Nature Genetics (2023) Vol. 55, Iss. 5, pp. 746-752
Open Access | Times Cited: 37
Fitness effects of mutations to SARS-CoV-2 proteins
Jesse D. Bloom, Richard A. Neher
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 31
A framework for automated scalable designation of viral pathogen lineages from genomic data
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, et al.
Nature Microbiology (2024) Vol. 9, Iss. 2, pp. 550-560
Open Access | Times Cited: 10
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution
Cassia Wagner, Kathryn E. Kistler, Garrett A. Perchetti, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 8
Contributions of Hyperactive Mutations in Mpro from SARS-CoV-2 to Drug Resistance
Julia M. Flynn, Sarah N. Zvornicanin, Tenzin Tsepal, et al.
ACS Infectious Diseases (2024) Vol. 10, Iss. 4, pp. 1174-1184
Closed Access | Times Cited: 7
The rise and spread of the SARS-CoV-2 AY.122 lineage in Russia
Galya V. Klink, Ksenia R. Safina, Elena Nabieva, et al.
Virus Evolution (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 32
Shifting mutational constraints in the SARS-CoV-2 receptor-binding domain during viral evolution
Tyler N. Starr, Allison J. Greaney, William W. Hannon, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 27
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2
Cheng Ye, Bryan Thornlow, Angie S. Hinrichs, et al.
Bioinformatics (2022) Vol. 38, Iss. 15, pp. 3734-3740
Open Access | Times Cited: 27
Early detection of the emerging SARS-CoV-2 BA.2.86 lineage through integrated genomic surveillance of wastewater and COVID-19 cases in Sweden, weeks 31 to 38 2023
Carmen Espinosa‐Gongora, Carlo Berg, Moa Rehn, et al.
Eurosurveillance (2023) Vol. 28, Iss. 46
Open Access | Times Cited: 20
A molnupiravir-associated mutational signature in global SARS-CoV-2 genomes
Theo Sanderson, Ryan Hisner, I’ah Donovan-Banfield, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 16
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny
Martin Hunt, Angie S. Hinrichs, D.P. Anderson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
A phylogenetic method identifies candidate drivers of the evolution of the SARS-CoV-2 mutation spectrum
Russ Corbett-Detig
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Air, surface, and wastewater surveillance of SARS-CoV-2; a multimodal evaluation of COVID-19 detection in a built environment
Andreas Olsen Martinez, Leslie Dietz, Hooman Parhizkar, et al.
Journal of Exposure Science & Environmental Epidemiology (2025)
Open Access
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