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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs
Swati Parekh, Christoph Ziegenhain, Beate Vieth, et al.
GigaScience (2018) Vol. 7, Iss. 6
Open Access | Times Cited: 333

Showing 1-25 of 333 citing articles:

Current best practices in single‐cell RNA‐seq analysis: a tutorial
Malte D. Luecken, Fabian J. Theis
Molecular Systems Biology (2019) Vol. 15, Iss. 6
Open Access | Times Cited: 1658
A scalable SCENIC workflow for single-cell gene regulatory network analysis
Bram Van de Sande, Christopher Flerin, Kristofer Davie, et al.
Nature Protocols (2020) Vol. 15, Iss. 7, pp. 2247-2276
Closed Access | Times Cited: 824
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods
Jiarui Ding, Xian Adiconis, Sean Simmons, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 6, pp. 737-746
Open Access | Times Cited: 700
Single-cell RNA counting at allele and isoform resolution using Smart-seq3
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 6, pp. 708-714
Open Access | Times Cited: 526
Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics
Hao Wu, Kohei Uchimura, Erinn L. Donnelly, et al.
Cell stem cell (2018) Vol. 23, Iss. 6, pp. 869-881.e8
Open Access | Times Cited: 503
SPOTlight: seeded NMF regression to deconvolute spatial transcriptomics spots with single-cell transcriptomes
Marc Elosua-Bayés, Paula Nieto, Elisabetta Mereu, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 9, pp. e50-e50
Open Access | Times Cited: 474
Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury
Yuhei Kirita, Hao Wu, Kohei Uchimura, et al.
Proceedings of the National Academy of Sciences (2020) Vol. 117, Iss. 27, pp. 15874-15883
Open Access | Times Cited: 418
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
Páll Melsted, A. Sina Booeshaghi, Lauren P. Liu, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 7, pp. 813-818
Open Access | Times Cited: 346
Beyond bulk: a review of single cell transcriptomics methodologies and applications
Ashwinikumar Kulkarni, Ashley G. Anderson, Devin P. Merullo, et al.
Current Opinion in Biotechnology (2019) Vol. 58, pp. 129-136
Open Access | Times Cited: 297
STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data
Benjamin Kaminow, Dinar Yunusov, Alexander Dobin
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 283
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Federico Scala, Dmitry Kobak, Matteo Bernabucci, et al.
Nature (2020) Vol. 598, Iss. 7879, pp. 144-150
Open Access | Times Cited: 281
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
Luke Zappia, Belinda Phipson, Alicia Oshlack
PLoS Computational Biology (2018) Vol. 14, Iss. 6, pp. e1006245-e1006245
Open Access | Times Cited: 270
A systematic evaluation of single cell RNA-seq analysis pipelines
Beate Vieth, Swati Parekh, Christoph Ziegenhain, et al.
Nature Communications (2019) Vol. 10, Iss. 1
Open Access | Times Cited: 237
Plasticity of Epididymal Adipose Tissue in Response to Diet-Induced Obesity at Single-Nucleus Resolution
Anitta Kinga Sárvári, Elvira Laila Van Hauwaert, Lasse K. Markussen, et al.
Cell Metabolism (2020) Vol. 33, Iss. 2, pp. 437-453.e5
Open Access | Times Cited: 231
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq
Johannes Bagnoli, Christoph Ziegenhain, Aleksandar Janjic, et al.
Nature Communications (2018) Vol. 9, Iss. 1
Open Access | Times Cited: 225
Single-cell connectomic analysis of adult mammalian lungs
Micha Sam Brickman Raredon, Taylor Adams, Yasir Suhail, et al.
Science Advances (2019) Vol. 5, Iss. 12
Open Access | Times Cited: 196
Single-cell technologies in hepatology: new insights into liver biology and disease pathogenesis
Prakash Ramachandran, Kylie P. Matchett, Ross Dobie, et al.
Nature Reviews Gastroenterology & Hepatology (2020) Vol. 17, Iss. 8, pp. 457-472
Open Access | Times Cited: 190
Human Fetal TNF-α-Cytokine-Producing CD4+ Effector Memory T Cells Promote Intestinal Development and Mediate Inflammation Early in Life
Renée Schreurs, Martin E. Baumdick, Adrian F. Sagebiel, et al.
Immunity (2019) Vol. 50, Iss. 2, pp. 462-476.e8
Open Access | Times Cited: 178
Embryo model completes gastrulation to neurulation and organogenesis
Gianluca Amadei, Charlotte E. Handford, Chengxiang Qiu, et al.
Nature (2022) Vol. 610, Iss. 7930, pp. 143-153
Open Access | Times Cited: 177
Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies
Atefeh Lafzi, Cátia Moutinho, Simone Picelli, et al.
Nature Protocols (2018) Vol. 13, Iss. 12, pp. 2742-2757
Open Access | Times Cited: 172
Area Postrema Cell Types that Mediate Nausea-Associated Behaviors
Chuchu Zhang, Judith A. Kaye, Zerong Cai, et al.
Neuron (2020) Vol. 109, Iss. 3, pp. 461-472.e5
Open Access | Times Cited: 163
Spatial sorting enables comprehensive characterization of liver zonation
Shani Ben‐Moshe, Yonatan Shapira, Andreas E. Moor, et al.
Nature Metabolism (2019) Vol. 1, Iss. 9, pp. 899-911
Open Access | Times Cited: 156
Cytotoxic CD4+ T lymphocytes may induce endothelial cell apoptosis in systemic sclerosis
Takashi Maehara, Naoki Kaneko, Cory A. Perugino, et al.
Journal of Clinical Investigation (2020) Vol. 130, Iss. 5, pp. 2451-2464
Open Access | Times Cited: 147
A single cell atlas of the human liver tumor microenvironment
Hassan Massalha, Keren Bahar Halpern, Samir Abu‐Gazala, et al.
Molecular Systems Biology (2020) Vol. 16, Iss. 12
Open Access | Times Cited: 139
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