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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

MuLan-Methyl—multiple transformer-based language models for accurate DNA methylation prediction
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
GigaScience (2022) Vol. 12
Open Access | Times Cited: 19

Showing 19 citing articles:

Large language models in bioinformatics: applications and perspectives
Jiajia Liu, Mengyuan Yang, Yankai Yu, et al.
arXiv (Cornell University) (2024)
Open Access | Times Cited: 8
The Explainability of Transformers: Current Status and Directions
Paolo Fantozzi, Maurizio Naldi
Computers (2024) Vol. 13, Iss. 4, pp. 92-92
Open Access | Times Cited: 5
Large language models and their applications in bioinformatics
Oluwafemi A. Sarumi, Dominik Heider
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 3498-3505
Open Access | Times Cited: 4
RNA Sequence Analysis Landscape: A Comprehensive Review of Task Types, Databases, Datasets, Word Embedding Methods, and Language Models
Muhammad Nabeel Asim, Muhammad Ali Ibrahim, Tayyaba Asif, et al.
Heliyon (2025) Vol. 11, Iss. 2, pp. e41488-e41488
Open Access
Application of machine learning and genomics for orphan crop improvement
Tessa R. MacNish, Monica F. Danilevicz, Philipp E. Bayer, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Transitioning from wet lab to artificial intelligence: a systematic review of AI predictors in CRISPR
Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Andreas Dengel
Journal of Translational Medicine (2025) Vol. 23, Iss. 1
Open Access
MethylProphet: A Generalized Gene-Contextual Model for Inferring Whole-Genome DNA Methylation Landscape
Xiaoke Huang, Qi Liu, Yifei Zhao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Peptide classification landscape: An in-depth systematic literature review on peptide types, databases, datasets, predictors architectures and performance
Muhammad Nabeel Asim, Tayyaba Asif, Faiza Mehmood, et al.
Computers in Biology and Medicine (2025) Vol. 188, pp. 109821-109821
Closed Access
Deciphering genomic codes using advanced natural language processing techniques: a scoping review
Shuyan Cheng, Yishu Wei, Yiliang Zhou, et al.
Journal of the American Medical Informatics Association (2025)
Closed Access
Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine
Sakhaa B. Alsaedi, Xin Gao, Takashi Gojobori
FEBS Open Bio (2025)
Open Access
A Review on the Applications of Transformer-based language models for Nucleotide Sequence Analysis
Nimisha Ghosh, Daniele Santoni, Indrajit Saha, et al.
Computational and Structural Biotechnology Journal (2025)
Open Access
DNA sequence analysis landscape: a comprehensive review of DNA sequence analysis task types, databases, datasets, word embedding methods, and language models
Muhammad Nabeel Asim, Muhammad Ali Ibrahim, Alam Zaib, et al.
Frontiers in Medicine (2025) Vol. 12
Open Access
Long extrachromosomal circular DNA identification by fusing sequence-derived features of physicochemical properties and nucleotide distribution patterns
Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Sheraz Ahmed, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 2
BERT-5mC: an interpretable model for predicting 5-methylcytosine sites of DNA based on BERT
Shuyu Wang, Yinbo Liu, Yufeng Liu, et al.
PeerJ (2023) Vol. 11, pp. e16600-e16600
Open Access | Times Cited: 5
STM-ac4C: a hybrid model for identification of N4-acetylcytidine (ac4C) in human mRNA based on selective kernel convolution, temporal convolutional network, and multi-head self-attention
Mengyue Yi, Fenglin Zhou, Yu Deng
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 1
Pretraining strategies for effective promoter-driven gene expression prediction
Aniketh Janardhan Reddy, Michael H. Herschl, Xinyang Geng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
An Integrated Multi-Model Framework Utilizing Convolutional Neural Networks Coupled with Feature Extraction for Identification of 4mC Sites in DNA Sequences
Muhammad Tahir, Shahid Hussain, Fawaz Khaled Alarfaj
Computers in Biology and Medicine (2024) Vol. 183, pp. 109281-109281
Closed Access
4mCPred-GSIMP: Predicting DNA N4-methylcytosine sites in the mouse genome with multi-Scale adaptive features extraction and fusion
Jianhua Jia, Yu Deng, Mengyue Yi, et al.
Mathematical Biosciences & Engineering (2023) Vol. 21, Iss. 1, pp. 253-271
Open Access | Times Cited: 1
iLEC-DNA: Identifying Long Extra-chromosomal Circular DNA by Fusing Sequence-derived Features of Physicochemical Properties and Nucleotide Distribution Patterns
Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Andreas Dengel, et al.
Research Square (Research Square) (2023)
Open Access
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