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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Comparative analysis of common alignment tools for single-cell RNA sequencing
Ralf Schulze Brüning, Lukas Tombor, Marcel H. Schulz, et al.
GigaScience (2022) Vol. 11
Open Access | Times Cited: 27

Showing 1-25 of 27 citing articles:

Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data
Dongze He, Mohsen Zakeri, Hirak Sarkar, et al.
Nature Methods (2022) Vol. 19, Iss. 3, pp. 316-322
Open Access | Times Cited: 65
The implications of single-cell RNA-seq analysis in prostate cancer: unraveling tumor heterogeneity, therapeutic implications and pathways towards personalized therapy
Dechao Feng, Weizhen Zhu, Jie Wang, et al.
Military Medical Research (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 20
miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data
Ariel A. Hippen, Matías Marín Falco, Lukas M. Weber, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 8, pp. e1009290-e1009290
Open Access | Times Cited: 70
Single-cell omics: experimental workflow, data analyses and applications
Fengying Sun, Haoyan Li, Dongqing Sun, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 8
Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single‐cell RNA sequencing analyses
Jorge A. Tzec‐Interián, Daianna González‐Padilla, Elsa Góngora‐Castillo
Quantitative Biology (2025) Vol. 13, Iss. 2
Open Access
Benchmarking UMI-based single-cell RNA-seq preprocessing workflows
Yue You, Luyi Tian, Shian Su, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 45
Single cell genomics as a transformative approach for aquaculture research and innovation
Rose Ruiz Daniels, Richard S. Taylor, Diego Robledo, et al.
Reviews in Aquaculture (2023) Vol. 15, Iss. 4, pp. 1618-1637
Open Access | Times Cited: 19
A single-cell transcriptome atlas of the maturing zebrafish telencephalon
Shristi Pandey, Anna J. Moyer, Summer B. Thyme
Genome Research (2023) Vol. 33, Iss. 4, pp. 658-671
Open Access | Times Cited: 17
From multitude to singularity: An up-to-date overview of scRNA-seq data generation and analysis
Giulia Carangelo, Alberto Magi, Roberto Semeraro
Frontiers in Genetics (2022) Vol. 13
Open Access | Times Cited: 17
Uncovering functional lncRNAs by scRNA-seq with ELATUS
Enrique Goñi, Aina Maria Mas, Amaya Abad, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison
Lucas Kuijpers, Bastian Hornung, Mirjam C. G. N. van den Hout - van Vroonhoven, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 1
Single-cell transcriptomics in tissue engineering and regenerative medicine
Anna Ruta, Kavita Krishnan, Jennifer H. Elisseeff
Nature Reviews Bioengineering (2023) Vol. 2, Iss. 2, pp. 101-119
Closed Access | Times Cited: 4
Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
Inbal Shainer, Manuel Stemmer
BMC Genomics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 8
Studying the Role of Astrocytes at Synapses Using Single-Cell Transcriptomics
Francisco Pestana, T. Grant Belgard, Thierry Voet, et al.
Neuromethods (2024), pp. 173-206
Closed Access
Impact of different tissue dissociation protocols on endothelial cell recovery from developing mouse lungs
Francesco Palumbo, Miša Gunjak, Patty J. Lee, et al.
Cytometry Part A (2024) Vol. 105, Iss. 7, pp. 521-535
Open Access
Uncovering functional lncRNAs by scRNA-seq with ELATUS
Enrique Goñi, Aina Maria Mas, Jovanna González, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access
Single Cell RNA Sequencing and Data Analysis
Mukunda Goswami, Ashikha Kitchlu, Bibhu Prasad Behera, et al.
Elsevier eBooks (2024)
Closed Access
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data
Maxime Lepetit, Mirela Diana Ilie, Marie Chanal, et al.
In Silico Biology (2023) Vol. 15, Iss. 1-2, pp. 11-21
Open Access | Times Cited: 1
ScAN1.0: A Reproducible and Standardized Pipeline for Processing 10X Single Cell Rnaseq Data
Maxime Lepetit, Mirela Diana Ilie, Marie Chanal, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
Reproductive Performance of Zi-Goose Promoted by Red Color Illumination
Manyu Li, Liang Chen, Xiuhua Zhao, et al.
Frontiers in Veterinary Science (2022) Vol. 9
Open Access | Times Cited: 1
Rattus norvegicus reference genome evaluation for hippocampus RNA-seq data analysis
Christophe Le Priol, Andrée Delahaye‐Duriez
Research Square (Research Square) (2023)
Open Access
HARDWARE ACCELERATION OF DNA READ ALIGNMENT PROGRAMS: CHALLENGES AND OPPORTUNITIES
P.R. Daniel, C. Ricardo, ALGREDO-BADILLO IGNACIO, et al.
Fractals (2023) Vol. 31, Iss. 07
Open Access
Underrepresentation of activating KIR gene expression in single‐cell RNA‐seq data is due to KIR gene misassignment
Eric Alves, Abha Chopra, Ramesh Ram, et al.
European Journal of Immunology (2023) Vol. 54, Iss. 1
Open Access
RNA Sequencing Technologies at the Single Cell Level in Plants
Alexandra V. Dolgikh, Elena A. Dolgikh
Russian Journal of Plant Physiology (2023) Vol. 70, Iss. 9
Closed Access
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