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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Building the mega single-cell transcriptome ocular meta-atlas
Vinay Swamy, Temesgen Fufa, Robert B. Hufnagel, et al.
GigaScience (2021) Vol. 10, Iss. 10
Open Access | Times Cited: 35

Showing 1-25 of 35 citing articles:

An integrated cell atlas of the lung in health and disease
Lisa Sikkema, Ciro Ramírez-Suástegui, Daniel Strobl, et al.
Nature Medicine (2023) Vol. 29, Iss. 6, pp. 1563-1577
Open Access | Times Cited: 332
An integrated cell atlas of the human lung in health and disease
Lisa Sikkema, Daniel Strobl, Luke Zappia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 80
Single-cell reference mapping to construct and extend cell-type hierarchies
Lieke Michielsen, Mohammad Lotfollahi, Daniel Strobl, et al.
NAR Genomics and Bioinformatics (2023) Vol. 5, Iss. 3
Open Access | Times Cited: 19
Single-cell sequencing in diabetic retinopathy: progress and prospects
Tianshu Yang, Ningzhi Zhang, Ning Yang
Journal of Translational Medicine (2025) Vol. 23, Iss. 1
Open Access
Cell-cell interactome of the hematopoietic niche and its changes in acute myeloid leukemia
Sarah Ennis, Alessandra Jordano Conforte, Eimear O’Reilly, et al.
iScience (2023) Vol. 26, Iss. 6, pp. 106943-106943
Open Access | Times Cited: 12
Systematic ocular phenotyping of 8,707 knockout mouse lines identifies genes associated with abnormal corneal phenotypes
Thao Vo, Denise M. Imai-Leonard, Benjamin A. Yang, et al.
BMC Genomics (2025) Vol. 26, Iss. 1
Open Access
Feature selection methods affect the performance of scRNA-seq data integration and querying
Luke Zappia, Sabrina Richter, Ciro Ramírez-Suástegui, et al.
Nature Methods (2025)
Open Access
Deep learning-based models for preimplantation mouse and human embryos based on single-cell RNA sequencing
Martin Proks, Nazmus Salehin, Joshua M. Brickman
Nature Methods (2024)
Open Access | Times Cited: 3
Cross-species scRNA-seq reveals the cellular landscape of retina and early alterations in type 2 diabetes mice
Kai Chen, Yinhao Wang, Youyuan Huang, et al.
Genomics (2023) Vol. 115, Iss. 4, pp. 110644-110644
Open Access | Times Cited: 9
Single-cell RNA sequencing in dissecting microenvironment of age-related macular degeneration: Challenges and perspectives
Yao Tan, Huang Jianguo, Deshuang Li, et al.
Ageing Research Reviews (2023) Vol. 90, pp. 102030-102030
Closed Access | Times Cited: 9
Deep Learning Based Models for Preimplantation Mouse and Human Development
Martin Proks, Nazmus Salehin, Joshua M. Brickman
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Single cell transcriptome analyses of the developing zebrafish eye— perspectives and applications
Oliver Vöcking, Jakub K. Famulski
Frontiers in Cell and Developmental Biology (2023) Vol. 11
Open Access | Times Cited: 5
Considerations for building and using integrated single-cell atlases
Karin Hrovatin, Lisa Sikkema, Vladimir A. Shitov, et al.
Nature Methods (2024)
Closed Access | Times Cited: 1
Integrating single-cell RNA-seq datasets with substantial batch effects
Karin Hrovatin, Amir Ali Moinfar, Luke Zappia, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Eyes on CHARGE syndrome: Roles of CHD7 in ocular development
Laura A. Krueger, Ann C. Morris
Frontiers in Cell and Developmental Biology (2022) Vol. 10
Open Access | Times Cited: 6
Spatial distribution of metabolites in the retina and its relevance to studies of metabolic retinal disorders
Roberto Bonelli, Sasha M. Woods, Sarah H. Lockwood, et al.
Metabolomics (2023) Vol. 19, Iss. 2
Open Access | Times Cited: 3
Lamin A upregulation reorganizes the genome during rod photoreceptor degeneration
Ivana Herrera, José Alex Lourenço Fernandes, Khatereh Shir-Mohammadi, et al.
Cell Death and Disease (2023) Vol. 14, Iss. 10
Open Access | Times Cited: 3
Single-cell reference mapping to construct and extend cell-type hierarchies
Lieke Michielsen, Mohammad Lotfollahi, Daniel Strobl, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 4
Gene Expression Data for Investigating Glaucoma Treatment Options and Pharmacology in the Anterior Segment, State-of-the-Art and Future Directions
Georg Fuellen, Anselm Jünemann
Frontiers in Neuroscience (2022) Vol. 16
Open Access | Times Cited: 4
SCAN: Spatiotemporal Cloud Atlas for Neural cells
Yushan Deng, Yubao Lu, Mengrou Li, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D998-D1009
Open Access | Times Cited: 2
Competent to Stand Trial—The Case for Temporal Control of Retinal Development
Sujay Shah, Suma Medisetti, José Alex Lourenço Fernandes, et al.
Elsevier eBooks (2024)
Closed Access
The role of adiponectin and its receptor signaling in ocular inflammation-associated diseases
Jing Gang Zheng, Wenqiu Zhang, Ran Xu, et al.
Biochemical and Biophysical Research Communications (2024) Vol. 717, pp. 150041-150041
Closed Access
PLAE Web App Enables Powerful Searching and Multiple Visualizations Across One Million Unified Single-Cell Ocular Transcriptomes
Vinay Swamy, Zachary Batz, David McGaughey
Translational Vision Science & Technology (2023) Vol. 12, Iss. 9, pp. 18-18
Open Access | Times Cited: 1
A Meta-Analytic Single-Cell Atlas of Mouse Bone Marrow Hematopoietic Development
Benjamin D. Harris, J. Jack Lee, Jesse Gillis
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 2
Chromatin remodeler Chd7 regulates photoreceptor development and outer segment length
Laura A. Krueger, Jessica D. Bills, Zun Yi Lim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
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