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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data
Matthew D. Young, Sam Behjati
GigaScience (2020) Vol. 9, Iss. 12
Open Access | Times Cited: 977

Showing 1-25 of 977 citing articles:

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Carly G.K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, et al.
Cell (2020) Vol. 181, Iss. 5, pp. 1016-1035.e19
Open Access | Times Cited: 2275
Current best practices in single‐cell RNA‐seq analysis: a tutorial
Malte D. Luecken, Fabian J. Theis
Molecular Systems Biology (2019) Vol. 15, Iss. 6
Open Access | Times Cited: 1658
COVID-19 severity correlates with airway epithelium–immune cell interactions identified by single-cell analysis
Robert Lorenz Chua, Soeren Lukassen, Saskia Trump, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 8, pp. 970-979
Open Access | Times Cited: 1034
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
Aaron T. L. Lun, Samantha J. Riesenfeld, Tallulah Andrews, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 827
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
Michal Slyper, Caroline Porter, Orr Ashenberg, et al.
Nature Medicine (2020) Vol. 26, Iss. 5, pp. 792-802
Open Access | Times Cited: 545
Molecular topography of an entire nervous system
Seth R. Taylor, Gabriel Santpere, Alexis Weinreb, et al.
Cell (2021) Vol. 184, Iss. 16, pp. 4329-4347.e23
Open Access | Times Cited: 517
Dysregulation of brain and choroid plexus cell types in severe COVID-19
Andrew C. Yang, Fabian Kern, Patricia Morán Losada, et al.
Nature (2021) Vol. 595, Iss. 7868, pp. 565-571
Open Access | Times Cited: 511
Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis
Maximilian Strunz, Lukas M. Simon, Meshal Ansari, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 503
Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity
Alison E. Ringel, Jefte M. Drijvers, Gregory J. Baker, et al.
Cell (2020) Vol. 183, Iss. 7, pp. 1848-1866.e26
Open Access | Times Cited: 486
A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
Jonathan S. Packer, Qin Zhu, Chau Huynh, et al.
Science (2019) Vol. 365, Iss. 6459
Open Access | Times Cited: 483
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
Elena Denisenko, Belinda B. Guo, Matthew Jones, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 461
Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 427
Cells of the human intestinal tract mapped across space and time
Rasa Elmentaite, Natsuhiko Kumasaka, Kenny Roberts, et al.
Nature (2021) Vol. 597, Iss. 7875, pp. 250-255
Open Access | Times Cited: 422
Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury
Yuhei Kirita, Hao Wu, Kohei Uchimura, et al.
Proceedings of the National Academy of Sciences (2020) Vol. 117, Iss. 27, pp. 15874-15883
Open Access | Times Cited: 418
Tumor and immune reprogramming during immunotherapy in advanced renal cell carcinoma
Kevin Bi, Meng Xiao He, Ziad Bakouny, et al.
Cancer Cell (2021) Vol. 39, Iss. 5, pp. 649-661.e5
Open Access | Times Cited: 400
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
Elo Madissoon, Anna Wilbrey-Clark, Ricardo J. Miragaia, et al.
Genome biology (2019) Vol. 21, Iss. 1
Open Access | Times Cited: 382
Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging
Denis A. Mogilenko, Oleg Shpynov, Prabhakar S. Andhey, et al.
Immunity (2020) Vol. 54, Iss. 1, pp. 99-115.e12
Open Access | Times Cited: 378
Spatiotemporal immune zonation of the human kidney
Benjamin Stewart, John R. Ferdinand, Matthew D. Young, et al.
Science (2019) Vol. 365, Iss. 6460, pp. 1461-1466
Open Access | Times Cited: 354
Joint probabilistic modeling of single-cell multi-omic data with totalVI
Adam Gayoso, Zoë Steier, Romain Lopez, et al.
Nature Methods (2021) Vol. 18, Iss. 3, pp. 272-282
Open Access | Times Cited: 351
Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes
Haynes Heaton, Arthur M. Talman, Andrew Knights, et al.
Nature Methods (2020) Vol. 17, Iss. 6, pp. 615-620
Open Access | Times Cited: 349
An atlas of healthy and injured cell states and niches in the human kidney
Blue B. Lake, Rajasree Menon, Seth Winfree, et al.
Nature (2023) Vol. 619, Iss. 7970, pp. 585-594
Open Access | Times Cited: 302
Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers
Michael J. Petrany, Casey O. Swoboda, Chengyi Sun, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 275
Integrated Single-Cell Atlas of Endothelial Cells of the Human Lung
Jonas C. Schupp, Taylor Adams, Carlos Cosme, et al.
Circulation (2021) Vol. 144, Iss. 4, pp. 286-302
Open Access | Times Cited: 271
Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender
Stephen J. Fleming, Mark Chaffin, Alessandro Arduini, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1323-1335
Open Access | Times Cited: 268
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