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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Streamlining data-intensive biology with workflow systems
Taylor Reiter, Phillip Brooks, Luiz Irber, et al.
GigaScience (2021) Vol. 10, Iss. 1
Open Access | Times Cited: 41

Showing 1-25 of 41 citing articles:

Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
Laura Wratten, Andreas Wilm, Jonathan Göke
Nature Methods (2021) Vol. 18, Iss. 10, pp. 1161-1168
Closed Access | Times Cited: 158
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
Michael C. Schatz, Anthony Philippakis, Enis Afgan, et al.
Cell Genomics (2022) Vol. 2, Iss. 1, pp. 100085-100085
Open Access | Times Cited: 99
A simple guide to de novo transcriptome assembly and annotation
Venket Raghavan, Louis Kraft, Fantin Mesny, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 2
Open Access | Times Cited: 94
The five pillars of computational reproducibility: bioinformatics and beyond
Mark Ziemann, Pierre Poulain, Anusuiya Bora
Briefings in Bioinformatics (2023) Vol. 24, Iss. 6
Open Access | Times Cited: 16
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing – Review
Gabriel Dorado, Sergio Gálvez, Teresa E. Rosales Tham, et al.
Biomolecules (2021) Vol. 11, Iss. 8, pp. 1111-1111
Open Access | Times Cited: 38
DNA sequencing: an overview of solid-state and biological nanopore-based methods
Mohammad Mehdi Mohammadi, Omid Bavi
Biophysical Reviews (2021) Vol. 14, Iss. 1, pp. 99-110
Open Access | Times Cited: 33
Navigating bottlenecks and trade-offs in genomic data analysis
Bonnie Berger, Yun William Yu
Nature Reviews Genetics (2022) Vol. 24, Iss. 4, pp. 235-250
Open Access | Times Cited: 27
Ten simple rules and a template for creating workflows-as-applications
Michael J. Roach, N. Tessa Pierce‐Ward, Radosław Suchecki, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 12, pp. e1010705-e1010705
Open Access | Times Cited: 26
Decoding dissolved information: environmental DNA sequencing at global scale to monitor a changing ocean
Luke Thompson, Peter Thielen
Current Opinion in Biotechnology (2023) Vol. 81, pp. 102936-102936
Closed Access | Times Cited: 15
Principles for data analysis workflows
Sara Stoudt, Váleri Vásquez, Ciera Martinez
PLoS Computational Biology (2021) Vol. 17, Iss. 3, pp. e1008770-e1008770
Open Access | Times Cited: 32
Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems
Marine Djaffardjy, George Marchment, Clémence Sebe, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2075-2085
Open Access | Times Cited: 12
A multi-omics data analysis workflow packaged as a FAIR Digital Object
Anna Niehues, Casper de Visser, Fiona A. Hagenbeek, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 4
Parallelizing RNA-Seq Analysis with BioSkel: A FastFlow Based Prototype
Valentin Beauvais, Nicolò Tonci, Sophie Robert, et al.
International Journal of Parallel Programming (2025) Vol. 53, Iss. 2
Closed Access
Using prototyping to choose a bioinformatics workflow management system
Michael Jackson, Kostas Kavoussanakis, Edward W. Wallace
PLoS Computational Biology (2021) Vol. 17, Iss. 2, pp. e1008622-e1008622
Open Access | Times Cited: 25
Ten simple rules for making a software tool workflow-ready
Paul Brack, Peter Crowther, Stian Soiland‐Reyes, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 3, pp. e1009823-e1009823
Open Access | Times Cited: 16
Resources and tools for rare disease variant interpretation
Luana Licata, Allegra Via, Paola Turina, et al.
Frontiers in Molecular Biosciences (2023) Vol. 10
Open Access | Times Cited: 9
A practical guide to cross-cultural and multi-sited data collection in the biological and behavioural sciences
Laure Spake, Anushé Hassan, Susan B. Schaffnit, et al.
Proceedings of the Royal Society B Biological Sciences (2024) Vol. 291, Iss. 2021
Open Access | Times Cited: 3
Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake
Luke Thompson, Sean R. Anderson, Paul A. Den Uyl, et al.
GigaScience (2022) Vol. 11
Open Access | Times Cited: 14
Pre‐exascale HPC approaches for molecular dynamics simulations. Covid‐19 research: A use case
Miłosz Wieczór, Vito Genna, Juan Aranda, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 13
Cloud-based large-scale curation of medical imaging data using AI segmentation
Vamsi Thiriveedhi, Deepa Krishnaswamy, David Clunie, et al.
Research Square (Research Square) (2024)
Open Access | Times Cited: 2
Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly
Arianna I. Krinos, Natalie R. Cohen, Michael J. Follows, et al.
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 6
Metaphor—A workflow for streamlined assembly and binning of metagenomes
Vinícius Salazar, Babak Shaban, Maria del Mar Quiroga, et al.
GigaScience (2022) Vol. 12
Open Access | Times Cited: 10
Ten simple rules to cultivate transdisciplinary collaboration in data science
Faryad Darabi Sahneh, Meghan A. Balk, Marina Kisley, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 5, pp. e1008879-e1008879
Open Access | Times Cited: 14
ginmappeR: an unified approach for integrating gene and protein identifiers across biological sequence databases
F. Vazquez de Sola, Daniel Ayala, Marina R. Pulido, et al.
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 1
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