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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Advances and opportunities in image analysis of bacterial cells and communities
Hannah Jeckel, Knut Drescher
FEMS Microbiology Reviews (2020) Vol. 45, Iss. 4
Open Access | Times Cited: 83

Showing 1-25 of 83 citing articles:

Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation
Kevin J. Cutler, Carsen Stringer, Teresa W. Lo, et al.
Nature Methods (2022) Vol. 19, Iss. 11, pp. 1438-1448
Open Access | Times Cited: 153
Machine learning for microbiologists
Francesco Asnicar, Andrew Maltez Thomas, Andrea Passerini, et al.
Nature Reviews Microbiology (2023) Vol. 22, Iss. 4, pp. 191-205
Open Access | Times Cited: 74
Proliferating active matter
Oskar Hallatschek, Sujit S. Datta, Knut Drescher, et al.
Nature Reviews Physics (2023) Vol. 5, Iss. 7, pp. 407-419
Open Access | Times Cited: 45
Biofilm formation on human immune cells is a multicellular predation strategy of Vibrio cholerae
Lucia Vidakovic, Sofya Mikhaleva, Hannah Jeckel, et al.
Cell (2023) Vol. 186, Iss. 12, pp. 2690-2704.e20
Open Access | Times Cited: 42
Competition, Nodule Occupancy, and Persistence of Inoculant Strains: Key Factors in the Rhizobium-Legume Symbioses
Marcela Mendoza-Suárez, Stig Uggerhøj Andersen, Philip S. Poole, et al.
Frontiers in Plant Science (2021) Vol. 12
Open Access | Times Cited: 75
Multispecies biofilm architecture determines bacterial exposure to phages
James B. Winans, Benjamin R. Wucher, Carey D. Nadell
PLoS Biology (2022) Vol. 20, Iss. 12, pp. e3001913-e3001913
Open Access | Times Cited: 58
Misic, a general deep learning-based method for the high-throughput cell segmentation of complex bacterial communities
Swapnesh Panigrahi, Dorothée Murat, Antoine Le Gall, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 57
Single‐cell segmentation in bacterial biofilms with an optimized deep learning method enables tracking of cell lineages and measurements of growth rates
Eric Jelli, Takuya Ohmura, Niklas Netter, et al.
Molecular Microbiology (2023) Vol. 119, Iss. 6, pp. 659-676
Open Access | Times Cited: 20
Deep generative modeling of annotated bacterial biofilm images
Angelina A. Holicheva, Konstantin S. Kozlov, Daniil A. Boiko, et al.
npj Biofilms and Microbiomes (2025) Vol. 11, Iss. 1
Open Access
Insights into the morphology‐productivity relationship of filamentous fungi through small‐scale cultivation and automated microscopy of Thermothelomyces thermophilus
Katja Rohr, Bertram Geinitz, Johannes Seiffarth, et al.
Biotechnology Progress (2025)
Open Access
Spatial alanine metabolism determines local growth dynamics of Escherichia coli colonies
Francisco Díaz-Pascual, Martin Lempp, Kazuki Nosho, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 52
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud
Johannes Seiffarth, Tim Scherr, Bastian Wollenhaupt, et al.
SoftwareX (2024) Vol. 26, pp. 101638-101638
Open Access | Times Cited: 5
Opportunities and limits in imaging microorganisms and their activities in soil microhabitats
Charlotte Védère, Laure Vieublé Gonod, Naoise Nunan, et al.
Soil Biology and Biochemistry (2022) Vol. 174, pp. 108807-108807
Open Access | Times Cited: 25
Tools of the Trade: Image Analysis Programs for Confocal Laser-Scanning Microscopy Studies of Biofilms and Considerations for Their Use by Experimental Researchers
Shreeya Mhade, Karishma S. Kaushik
ACS Omega (2023) Vol. 8, Iss. 23, pp. 20163-20177
Open Access | Times Cited: 12
Recent advances in experimental design and data analysis to characterize prokaryotic motility
Megan Marie Dubay, Jacqueline M. Acres, Max Riekeles, et al.
Journal of Microbiological Methods (2022) Vol. 204, pp. 106658-106658
Open Access | Times Cited: 19
Microbial Biofilms: Structural Plasticity and Emerging Properties
Arnaud Bridier, Romain Briandet
Microorganisms (2022) Vol. 10, Iss. 1, pp. 138-138
Open Access | Times Cited: 18
Simultaneous spatiotemporal transcriptomics and microscopy of Bacillus subtilis swarm development reveal cooperation across generations
Hannah Jeckel, Kazuki Nosho, Konstantin Neuhaus, et al.
Nature Microbiology (2023) Vol. 8, Iss. 12, pp. 2378-2391
Open Access | Times Cited: 10
Tracking bacteria at high density with FAST, the Feature-Assisted Segmenter/Tracker
Oliver J. Meacock, William M. Durham
PLoS Computational Biology (2023) Vol. 19, Iss. 10, pp. e1011524-e1011524
Open Access | Times Cited: 8
In Vivo Microrheology Reveals Local Elastic and Plastic Responses Inside 3D Bacterial Biofilms
Takuya Ohmura, Dominic J. Skinner, Konstantin Neuhaus, et al.
Advanced Materials (2024) Vol. 36, Iss. 29
Open Access | Times Cited: 2
A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics
Atiyeh Ahmadi, Matthew Courtney, Carolyn L. Ren, et al.
Microbiology Spectrum (2024) Vol. 12, Iss. 8
Open Access | Times Cited: 2
Identifying the presence of bacteria on digital images by using asymmetric distribution with k-means clustering algorithm
K. V. Satyanarayana, N. Thirupathi Rao, Debnath Bhattacharyya, et al.
Multidimensional Systems and Signal Processing (2021) Vol. 33, Iss. 2, pp. 301-326
Open Access | Times Cited: 21
Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation
Kevin J. Cutler, Carsen Stringer, Paul A. Wiggins, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 21
Deep Learning Concepts and Applications for Synthetic Biology
William A V Beardall, Guy‐Bart Stan, Mary J. Dunlop
GEN Biotechnology (2022) Vol. 1, Iss. 4, pp. 360-371
Open Access | Times Cited: 14
BCM3D 2.0: accurate segmentation of single bacterial cells in dense biofilms using computationally generated intermediate image representations
Ji Zhang, Yibo Wang, Eric D. Donarski, et al.
npj Biofilms and Microbiomes (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 13
Tools and methods for high-throughput single-cell imaging with the mother machine
Ryan Thiermann, Michael Sandler, Gursharan Ahir, et al.
eLife (2023) Vol. 12
Open Access | Times Cited: 7
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