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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Basin Hopping Graph: a computational framework to characterize RNA folding landscapes
Marcel Kucharík, Ivo L. Hofacker, Peter F. Stadler, et al.
Bioinformatics (2014) Vol. 30, Iss. 14, pp. 2009-2017
Open Access | Times Cited: 42

Showing 1-25 of 42 citing articles:

Predicting RNA secondary structures from sequence and probing data
Ronny Lorenz, Michael T. Wolfinger, Andrea Tanzer, et al.
Methods (2016) Vol. 103, pp. 86-98
Open Access | Times Cited: 105
Design of Artificial Riboswitches as Biosensors
Sven Findeiß, Maja Etzel, Sebastian Will, et al.
Sensors (2017) Vol. 17, Iss. 9, pp. 1990-1990
Open Access | Times Cited: 62
Optimal Design of a Biconvex Airfoil for a Supersonic Aircraft Using the Basin-Hopping and Exhaustive Search Methods
Zhen-Xue Han, Owen Luo, Cheng Luo
Journal of Basic & Applied Sciences (2025) Vol. 21, pp. 53-65
Open Access
A performance analysis of Basin hopping compared to established metaheuristics for global optimization
Marco Baioletti, Valentino Santucci, Marco Tomassini
Journal of Global Optimization (2024) Vol. 89, Iss. 3, pp. 803-832
Open Access | Times Cited: 4
Understanding the kinetic mechanism of RNA single base pair formation
Xiaojun Xu, Tao Yu, Shi‐Jie Chen
Proceedings of the National Academy of Sciences (2015) Vol. 113, Iss. 1, pp. 116-121
Open Access | Times Cited: 43
Pseudoknots in RNA folding landscapes
Marcel Kucharík, Ivo L. Hofacker, Peter F. Stadler, et al.
Bioinformatics (2015) Vol. 32, Iss. 2, pp. 187-194
Open Access | Times Cited: 35
Thermodynamic and Kinetic Folding of Riboswitches
Stefan Badelt, Stefan Hammer, Christoph Flamm, et al.
Methods in enzymology on CD-ROM/Methods in enzymology (2015), pp. 193-213
Closed Access | Times Cited: 23
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model
Stefan Badelt, Ronny Lorenz, Ivo L. Hofacker
Bioinformatics (2023) Vol. 39, Iss. 1
Open Access | Times Cited: 6
Efficient approximations of RNA kinetics landscape using non-redundant sampling
Juraj Michálik, Hélène Touzet, Yann Ponty
Bioinformatics (2017) Vol. 33, Iss. 14, pp. i283-i292
Open Access | Times Cited: 17
A Polymer Physics Framework for the Entropy of Arbitrary Pseudoknots
Ofer Kimchi, Tristan Cragnolini, Michael P. Brenner, et al.
Biophysical Journal (2019) Vol. 117, Iss. 3, pp. 520-532
Open Access | Times Cited: 16
Efficient computation of co-transcriptional RNA-ligand interaction dynamics
Michael T. Wolfinger, Christoph Flamm, Ivo L. Hofacker
Methods (2018) Vol. 143, pp. 70-76
Open Access | Times Cited: 14
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data
Jianyu Zhou, Pan Li, Wanwen Zeng, et al.
Quantitative Biology (2020) Vol. 8, Iss. 4, pp. 369-381
Open Access | Times Cited: 12
Memory-efficient RNA energy landscape exploration
Martin Mann, Marcel Kucharík, Christoph Flamm, et al.
Bioinformatics (2014) Vol. 30, Iss. 18, pp. 2584-2591
Open Access | Times Cited: 10
Design of Transcription Regulating Riboswitches
Sven Findeiß, Manja Wachsmuth, Mario Mörl, et al.
Methods in enzymology on CD-ROM/Methods in enzymology (2014), pp. 1-22
Closed Access | Times Cited: 9
A Local Optima Network View of Real Function Fitness Landscapes
Marco Tomassini
Entropy (2022) Vol. 24, Iss. 5, pp. 703-703
Open Access | Times Cited: 5
Network Properties of the Ensemble of RNA Structures
Peter Clote, Amir H. Bayegan
PLoS ONE (2015) Vol. 10, Iss. 10, pp. e0139476-e0139476
Open Access | Times Cited: 6
Ant colony optimization for predicting RNA folding pathways
Seira Takitou, Akito Taneda
Computational Biology and Chemistry (2019) Vol. 83, pp. 107118-107118
Closed Access | Times Cited: 6
Quasi-species evolution maximizes genotypic reproductive value (not fitness or flatness)
Matteo Smerlak
Journal of Theoretical Biology (2021) Vol. 522, pp. 110699-110699
Open Access | Times Cited: 6
pourRNA—a time- and memory-efficient approach for the guided exploration of RNA energy landscapes
Gregor Entzian, Martin Raden
Bioinformatics (2019) Vol. 36, Iss. 2, pp. 462-469
Closed Access | Times Cited: 5
Comparing the Optimization Behaviour of Heuristics with Topology Based Visualization
Simon Bin, Sebastian Volke, Gerik Scheuermann, et al.
Lecture notes in computer science (2014), pp. 47-58
Closed Access | Times Cited: 3
Random versus Deterministic Descent in RNA Energy Landscape Analysis
Luke Day, Ouala Abdelhadi Ep Souki, Andreas Albrecht, et al.
Advances in Bioinformatics (2016) Vol. 2016, pp. 1-10
Open Access | Times Cited: 2
Computational Design of a Circular RNA with Prionlike Behavior
Stefan Badelt, Christoph Flamm, Ivo L. Hofacker
Artificial Life (2016) Vol. 22, Iss. 2, pp. 172-184
Closed Access | Times Cited: 2
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes
Gregor Entzian, Ivo L. Hofacker, Yann Ponty, et al.
Bioinformatics (2021) Vol. 37, Iss. 15, pp. 2126-2133
Open Access | Times Cited: 3
Predicting Model and Algorithm in RNA Folding Structure Including Pseudoknots
Zhendong Liu, Daming Zhu, Qionghai Dai
International Journal of Pattern Recognition and Artificial Intelligence (2018) Vol. 32, Iss. 10, pp. 1851005-1851005
Open Access | Times Cited: 2
Effective potential reveals evolutionary trajectories in complex fitness landscapes
Matteo Smerlak
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 2
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