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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Coolpup.py: versatile pile-up analysis of Hi-C data
Ilya M. Flyamer, Robert S. Illingworth, Wendy A. Bickmore
Bioinformatics (2020) Vol. 36, Iss. 10, pp. 2980-2985
Open Access | Times Cited: 165

Showing 1-25 of 165 citing articles:

Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues
Marek Bartošovič, Mukund Kabbe, Gonçalo Castelo‐Branco
Nature Biotechnology (2021) Vol. 39, Iss. 7, pp. 825-835
Open Access | Times Cited: 317
Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells
James Rhodes, Angelika Feldmann, Benjamín Hernández-Rodríguez, et al.
Cell Reports (2020) Vol. 30, Iss. 3, pp. 820-835.e10
Open Access | Times Cited: 165
Heat stress-induced transposon activation correlates with 3D chromatin organization rearrangement in Arabidopsis
Linhua Sun, Yuqing Jing, Xinyu Liu, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 144
MCM complexes are barriers that restrict cohesin-mediated loop extrusion
Bart J. H. Dequeker, Matthias J Scherr, Hugo B. Brandão, et al.
Nature (2022) Vol. 606, Iss. 7912, pp. 197-203
Open Access | Times Cited: 113
Hi-C analyses with GENOVA: a case study with cohesin variants
Robin H. van der Weide, Teun van den Brand, Judith H.I. Haarhuis, et al.
NAR Genomics and Bioinformatics (2021) Vol. 3, Iss. 2
Open Access | Times Cited: 110
Enhancer–promoter contact formation requires RNAPII and antagonizes loop extrusion
Shu Zhang, Nadine Übelmesser, Mariano Barbieri, et al.
Nature Genetics (2023) Vol. 55, Iss. 5, pp. 832-840
Open Access | Times Cited: 108
Cooltools: Enabling high-resolution Hi-C analysis in Python
Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 5, pp. e1012067-e1012067
Open Access | Times Cited: 97
MyoD is a 3D genome structure organizer for muscle cell identity
Ruiting Wang, Fengling Chen, Qian Chen, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 86
Cooltools: enabling high-resolution Hi-C analysis in Python
Nezar Abdennur, Sameer Abraham, Geoffrey Fudenberg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 85
CBP/p300 and HDAC activities regulate H3K27 acetylation dynamics and zygotic genome activation in mouse preimplantation embryos
Meng Wang, Zhiyuan Chen, Yi Zhang
The EMBO Journal (2022) Vol. 41, Iss. 22
Open Access | Times Cited: 83
SARS-CoV-2 restructures host chromatin architecture
Ruoyu Wang, Joo‐Hyung Lee, Jieun Kim, et al.
Nature Microbiology (2023) Vol. 8, Iss. 4, pp. 679-694
Open Access | Times Cited: 63
Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils
Kristian Jeppsson, Biswajit Pradhan, Takashi Sutani, et al.
Molecular Cell (2024) Vol. 84, Iss. 5, pp. 867-882.e5
Open Access | Times Cited: 30
CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response
Grégoire Stik, Enrique Vidal, Mercedes Barrero, et al.
Nature Genetics (2020) Vol. 52, Iss. 7, pp. 655-661
Open Access | Times Cited: 124
A central role for canonical PRC1 in shaping the 3D nuclear landscape
Shelagh Boyle, Ilya M. Flyamer, Iain Williamson, et al.
Genes & Development (2020) Vol. 34, Iss. 13-14, pp. 931-949
Open Access | Times Cited: 123
RNA polymerase II is required for spatial chromatin reorganization following exit from mitosis
Shu Zhang, Nadine Übelmesser, Nataša Josipović, et al.
Science Advances (2021) Vol. 7, Iss. 43
Open Access | Times Cited: 98
Cohesin residency determines chromatin loop patterns
Lorenzo Costantino, Tsung-Han S. Hsieh, Rebecca Lamothe, et al.
eLife (2020) Vol. 9
Open Access | Times Cited: 92
Suppression of liquid–liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells
Sergey V. Ulianov, Artem K. Velichko, Mikhail Magnitov, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 18, pp. 10524-10541
Open Access | Times Cited: 91
Orphan CpG islands amplify poised enhancer regulatory activity and determine target gene responsiveness
Tomás Pachano, Víctor Sánchez-Gaya, Thais Ealo, et al.
Nature Genetics (2021) Vol. 53, Iss. 7, pp. 1036-1049
Open Access | Times Cited: 87
CTCF-mediated chromatin looping provides a topological framework for the formation of phase-separated transcriptional condensates
Ryanggeun Lee, Moo-Koo Kang, Yong-Jin Kim, et al.
Nucleic Acids Research (2021) Vol. 50, Iss. 1, pp. 207-226
Open Access | Times Cited: 86
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors
Wenliang Wang, Aditi Chandra, Naomi Goldman, et al.
Nature Immunology (2022) Vol. 23, Iss. 7, pp. 1052-1062
Open Access | Times Cited: 64
The chromatin, topological and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo
Giuliano Crispatzu, Rizwan Rehimi, Tomás Pachano, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 63
CTCF and transcription influence chromatin structure re-configuration after mitosis
Haoyue Zhang, Jessica Lam, Di Zhang, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 57
Large-scale chromatin reorganization reactivates placenta-specific genes that drive cellular aging
Zunpeng Liu, Qianzhao Ji, Jie Ren, et al.
Developmental Cell (2022) Vol. 57, Iss. 11, pp. 1347-1368.e12
Open Access | Times Cited: 52
Stripenn detects architectural stripes from chromatin conformation data using computer vision
Sora Yoon, Aditi Chandra, Golnaz Vahedi
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 47
Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries
Zubairul Islam, Bharath Saravanan, Kaivalya Walavalkar, et al.
Genome Research (2023) Vol. 33, Iss. 1, pp. 1-17
Open Access | Times Cited: 32
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