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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact
Fuyi Li, Cunshuo Fan, Tatiana T. Marquez‐Lago, et al.
Briefings in Bioinformatics (2019) Vol. 21, Iss. 3, pp. 1069-1079
Open Access | Times Cited: 40

Showing 1-25 of 40 citing articles:

Procleave: Predicting Protease-Specific Substrate Cleavage Sites by Combining Sequence and Structural Information
Fuyi Li, André Leier, Quanzhong Liu, et al.
Genomics Proteomics & Bioinformatics (2020) Vol. 18, Iss. 1, pp. 52-64
Open Access | Times Cited: 97
INTEDE: interactome of drug-metabolizing enzymes
Jiayi Yin, Fengcheng Li, Ying Zhou, et al.
Nucleic Acids Research (2020) Vol. 49, Iss. D1, pp. D1233-D1243
Open Access | Times Cited: 87
iFeatureOmega:an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets
Zhen Chen, Xuhan Liu, Pei Zhao, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W434-W447
Open Access | Times Cited: 57
Positive-unlabeled learning in bioinformatics and computational biology: a brief review
Fuyi Li, Shuangyu Dong, André Leier, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 1
Closed Access | Times Cited: 56
Positive-unlabelled learning of glycosylation sites in the human proteome
Fuyi Li, Zhang Yang, Anthony W. Purcell, et al.
BMC Bioinformatics (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 70
Computational prediction and interpretation of both general and specific types of promoters in Escherichia coli by exploiting a stacked ensemble-learning framework
Fuyi Li, Jin-Xiang Chen, Zongyuan Ge, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 2, pp. 2126-2140
Open Access | Times Cited: 68
Systematic evaluation of machine learning methods for identifying human–pathogen protein–protein interactions
Huaming Chen, Fuyi Li, Lei Wang, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 3
Open Access | Times Cited: 54
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction
Yaqi Zhang, Gancheng Zhu, Kewei Li, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 5
Open Access | Times Cited: 31
Inspector: a lysine succinylation predictor based on edited nearest-neighbor undersampling and adaptive synthetic oversampling
Yan Zhu, Cangzhi Jia, Fuyi Li, et al.
Analytical Biochemistry (2020) Vol. 593, pp. 113592-113592
Closed Access | Times Cited: 49
Methodological advances in the design of peptide-based vaccines
Parismita Kalita, Timir Tripathi
Drug Discovery Today (2022) Vol. 27, Iss. 5, pp. 1367-1380
Closed Access | Times Cited: 23
m6A-TCPred: a web server to predict tissue-conserved human m6A sites using machine learning approach
Gang Tu, Xuan Wang, Rong Xia, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
Importance of protein Ser/Thr/Tyr phosphorylation for bacterial pathogenesis
Julie Bonne Køhler, Carsten Jers, Mériem Senissar, et al.
FEBS Letters (2020) Vol. 594, Iss. 15, pp. 2339-2369
Open Access | Times Cited: 33
Improving PTM Site Prediction by Coupling of Multi-Granularity Structure and Multi-Scale Sequence Representation
Zhengyi Li, Menglu Li, Lida Zhu, et al.
Proceedings of the AAAI Conference on Artificial Intelligence (2024) Vol. 38, Iss. 1, pp. 188-196
Open Access | Times Cited: 4
Current status of PTMs structural databases: applications, limitations and prospects
Alexandre G. de Brevern, Joseph Rebehmed
Amino Acids (2022) Vol. 54, Iss. 4, pp. 575-590
Closed Access | Times Cited: 17
m5CPred-SVM: a novel method for predicting m5C sites of RNA
Xiao Chen, Yi Xiong, Yinbo Liu, et al.
BMC Bioinformatics (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 27
Leveraging Protein Dynamics to Identify Functional Phosphorylation Sites using Deep Learning Models
Fei Zhu, Sijie Yang, Fanwang Meng, et al.
Journal of Chemical Information and Modeling (2022) Vol. 62, Iss. 14, pp. 3331-3345
Closed Access | Times Cited: 15
Characterization of Proteoform Post-Translational Modifications by Top-Down and Bottom-Up Mass Spectrometry in Conjunction with Annotations
Wenrong Chen, Zhengming Ding, Yong Zang, et al.
Journal of Proteome Research (2023) Vol. 22, Iss. 10, pp. 3178-3189
Open Access | Times Cited: 8
Formator: Predicting Lysine Formylation Sites Based on the Most Distant Undersampling and Safe-Level Synthetic Minority Oversampling
Cangzhi Jia, Meng Zhang, Cunshuo Fan, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019) Vol. 18, Iss. 5, pp. 1937-1945
Closed Access | Times Cited: 25
iCysMod: an integrative database for protein cysteine modifications in eukaryotes
Panqin Wang, Qingfeng Zhang, Shihua Li, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 5
Closed Access | Times Cited: 23
ActiveDriverDB: Interpreting Genetic Variation in Human and Cancer Genomes Using Post-translational Modification Sites and Signaling Networks (2021 Update)
Michał Krassowski, Diogo Pellegrina, Miles W. Mee, et al.
Frontiers in Cell and Developmental Biology (2021) Vol. 9
Open Access | Times Cited: 18
Dynamics of Post-Translational Modification Inspires Drug Design in the Kinase Family
Huimin Zhang, Jixiao He, Guang Hu, et al.
Journal of Medicinal Chemistry (2021) Vol. 64, Iss. 20, pp. 15111-15125
Closed Access | Times Cited: 17
pSuc-EDBAM: Predicting lysine succinylation sites in proteins based on ensemble dense blocks and an attention module
Jianhua Jia, Genqiang Wu, Meifang Li, et al.
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 11
Structural analysis of mammalian protein phosphorylation at a proteome level
Altuğ Kamacıoğlu, Nurcan Tunçbağ, Nurhan Özlü
Structure (2021) Vol. 29, Iss. 11, pp. 1219-1229.e3
Open Access | Times Cited: 14
PTMsnp: A Web Server for the Identification of Driver Mutations That Affect Protein Post-translational Modification
Di Peng, Huiqin Li, Bosu Hu, et al.
Frontiers in Cell and Developmental Biology (2020) Vol. 8
Open Access | Times Cited: 12
Characterization of proteoform post-translational modifications by top-down and bottom-up mass spectrometry in conjunction with UniProt annotations
Wenrong Chen, Zhengming Ding, Yong Zang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
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