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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Protein design via deep learning
Wenze Ding, Kenta Nakai, Haipeng Gong
Briefings in Bioinformatics (2022) Vol. 23, Iss. 3
Open Access | Times Cited: 56

Showing 1-25 of 56 citing articles:

AlphaFold, Artificial Intelligence (AI), and Allostery
Ruth Nussinov, Mingzhen Zhang, Yonglan Liu, et al.
The Journal of Physical Chemistry B (2022) Vol. 126, Iss. 34, pp. 6372-6383
Open Access | Times Cited: 100
Protein–protein interaction prediction with deep learning: A comprehensive review
Farzan Soleymani, Eric Paquet, Herna L. Viktor, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 5316-5341
Open Access | Times Cited: 81
Machine Learning-Guided Protein Engineering
Petr Kouba, Pavel Kohout, Faraneh Haddadi, et al.
ACS Catalysis (2023) Vol. 13, Iss. 21, pp. 13863-13895
Open Access | Times Cited: 65
Peptide-based drug discovery through artificial intelligence: towards an autonomous design of therapeutic peptides
Montserrat Goles, Anamaria Sanchez–Daza, Gabriel Cabas-Mora, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 15
Recent advances in predicting and modeling protein–protein interactions
Jesse Durham, Jing Zhang, Ian R. Humphreys, et al.
Trends in Biochemical Sciences (2023) Vol. 48, Iss. 6, pp. 527-538
Closed Access | Times Cited: 27
ProT-VAE: Protein Transformer Variational AutoEncoder for Functional Protein Design
Emre Sevgen, Joshua Moller, Adrian Lange, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 24
Protein Design Using Structure-Prediction Networks: AlphaFold and RoseTTAFold as Protein Structure Foundation Models
Jue Wang, Joseph L. Watson, Sidney L. Lisanza
Cold Spring Harbor Perspectives in Biology (2024) Vol. 16, Iss. 7, pp. a041472-a041472
Closed Access | Times Cited: 7
A survey of generative AI for de novo drug design: new frontiers in molecule and protein generation
Xiangru Tang, Howard Dai, Elizabeth Knight, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 7
Engineering ACE2 decoy receptors to combat viral escapability
Takao Arimori, Nariko Ikemura, Toru Okamoto, et al.
Trends in Pharmacological Sciences (2022) Vol. 43, Iss. 10, pp. 838-851
Open Access | Times Cited: 29
Accelerating therapeutic protein design with computational approaches toward the clinical stage
Zhidong Chen, Xinpei Wang, Xu Chen, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2909-2926
Open Access | Times Cited: 17
DeepAProt: Deep learning based abiotic stress protein sequence classification and identification tool in cereals
Bulbul Ahmed, Md. Ashraful Haque, Mir Asif Iquebal, et al.
Frontiers in Plant Science (2023) Vol. 13
Open Access | Times Cited: 15
Machine Learning: A Suitable Method for Biocatalysis
Pedro Sampaio, Pedro Fernandes
Catalysts (2023) Vol. 13, Iss. 6, pp. 961-961
Open Access | Times Cited: 15
Controllable Data Generation by Deep Learning: A Review
Shi-Yu Wang, Yuanqi Du, Xiaojie Guo, et al.
ACM Computing Surveys (2024) Vol. 56, Iss. 9, pp. 1-38
Open Access | Times Cited: 5
Graphormer supervised de novo protein design method and function validation
Junxi Mu, Zhengxin Li, Bo Zhang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 5
Large language models in bioinformatics: applications and perspectives
Jiajia Liu, Mengyuan Yang, Yankai Yu, et al.
arXiv (Cornell University) (2024)
Open Access | Times Cited: 4
Affinity chromatography for virus-like particle manufacturing: Challenges, solutions, and perspectives
Jing Ma, Z Tian, Qinghong Shi, et al.
Journal of Chromatography A (2024) Vol. 1721, pp. 464851-464851
Closed Access | Times Cited: 4
Cytochrome P450 Enzyme Design by Constraining the Catalytic Pocket in a Diffusion Model
Qian Wang, Xiaonan Liu, Hejian Zhang, et al.
Research (2024) Vol. 7
Open Access | Times Cited: 3
AI-Assisted Rational Design and Activity Prediction of Biological Elements for Optimizing Transcription-Factor-Based Biosensors
Nana Ding, Zenan Yuan, Zheng Ma, et al.
Molecules (2024) Vol. 29, Iss. 15, pp. 3512-3512
Open Access | Times Cited: 3
Engineered soluble ACE2 receptor: Responding to change with change
Guangyao Li, Kewen Qian, Shuyi Zhang, et al.
Frontiers in Immunology (2023) Vol. 13
Open Access | Times Cited: 8
SPDesign: protein sequence designer based on structural sequence profile using ultrafast shape recognition
Hui Wang, Dong Liu, Kailong Zhao, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 2
ProtWave-VAE: Integrating Autoregressive Sampling with Latent-Based Inference for Data-Driven Protein Design
Nikša Praljak, Xinran Lian, Rama Ranganathan, et al.
ACS Synthetic Biology (2023) Vol. 12, Iss. 12, pp. 3544-3561
Open Access | Times Cited: 6
Recent Advances in the Prediction of Subcellular Localization of Proteins and Related Topics
Kenta Nakai, Leyi Wei
Frontiers in Bioinformatics (2022) Vol. 2
Open Access | Times Cited: 10
Importance of Inter-residue Contacts for Understanding Protein Folding and Unfolding Rates, Remote Homology, and Drug Design
Balasubramanian Harihar, Konda Mani Saravanan, M. Michael Gromiha, et al.
Molecular Biotechnology (2024)
Closed Access | Times Cited: 1
Design of Antigen-Specific Antibody CDRH3 Sequences Using AI and Germline-Based Templates
Toma M. Marinov, Alexandra A. Abu-Shmais, Alexis K. Janke, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Combining transformer and 3DCNN models to achieve co-design of structures and sequences of antibodies in a diffusional manner
Yue Hu, Tao Feng, WenJun Lan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 1
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