OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Leveraging the attention mechanism to improve the identification of DNA N6-methyladenine sites
Ying Zhang, Yan Liu, Jian Xu, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 61
Ying Zhang, Yan Liu, Jian Xu, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 61
Showing 1-25 of 61 citing articles:
H2Opred: a robust and efficient hybrid deep learning model for predicting 2’-O-methylation sites in human RNA
Nhat Truong Pham, Rajan Rakkiyapan, Jongsun Park, et al.
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 24
Nhat Truong Pham, Rajan Rakkiyapan, Jongsun Park, et al.
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 24
iDNA-OpenPrompt: OpenPrompt learning model for identifying DNA methylation
Xia Yu, Jia Ren, Haixia Long, et al.
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 12
Xia Yu, Jia Ren, Haixia Long, et al.
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 12
Unlocking the black box: an in-depth review on interpretability, explainability, and reliability in deep learning
Emrullah Şahin, Naciye Nur Arslan, Durmuş Özdemir
Neural Computing and Applications (2024)
Closed Access | Times Cited: 6
Emrullah Şahin, Naciye Nur Arslan, Durmuş Özdemir
Neural Computing and Applications (2024)
Closed Access | Times Cited: 6
Sequence pre-training-based graph neural network for predicting lncRNA-miRNA associations
Zixiao Wang, Shiyang Liang, Siwei Liu, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Closed Access | Times Cited: 13
Zixiao Wang, Shiyang Liang, Siwei Liu, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Closed Access | Times Cited: 13
NRGCNMDA: Microbe-Drug Association Prediction Based on Residual Graph Convolutional Networks and Conditional Random Fields
Xiaoxin Du, Jingwei Li, Bo Wang, et al.
Interdisciplinary Sciences Computational Life Sciences (2025)
Closed Access
Xiaoxin Du, Jingwei Li, Bo Wang, et al.
Interdisciplinary Sciences Computational Life Sciences (2025)
Closed Access
A genome-wide scan of non-coding RNAs and enhancers for refractive error and myopia
Milly S. Tedja, Joanna Swierkowska, Clair A. Enthoven, et al.
Human Genetics (2025)
Open Access
Milly S. Tedja, Joanna Swierkowska, Clair A. Enthoven, et al.
Human Genetics (2025)
Open Access
DTI-MHAPR: optimized drug-target interaction prediction via PCA-enhanced features and heterogeneous graph attention networks
Guang Yang, Yinbo Liu, SiJian Wen, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
Guang Yang, Yinbo Liu, SiJian Wen, et al.
BMC Bioinformatics (2025) Vol. 26, Iss. 1
Open Access
Analysis of whole transcriptome reveals the immune response to porcine reproductive and respiratory syndrome virus infection and tylvalosin tartrate treatment in the porcine alveolar macrophages
K. Du, Yu Xia, Qian Wu, et al.
Frontiers in Immunology (2025) Vol. 15
Open Access
K. Du, Yu Xia, Qian Wu, et al.
Frontiers in Immunology (2025) Vol. 15
Open Access
HEDDI-Net: heterogeneous network embedding for drug-disease association prediction and drug repurposing, with application to Alzheimer’s disease
Yin-Yuan Su, Hsuan‐Cheng Huang, Yu‐Ting Lin, et al.
Journal of Translational Medicine (2025) Vol. 23, Iss. 1
Open Access
Yin-Yuan Su, Hsuan‐Cheng Huang, Yu‐Ting Lin, et al.
Journal of Translational Medicine (2025) Vol. 23, Iss. 1
Open Access
Electroacupuncture alleviates damage to myopic RGCs probably through lncRNA-XR_002789763.1-mediated mitophagy
Xuejun Wang, Qinghong Lin, Li Tian, et al.
Chinese Medicine (2025) Vol. 20, Iss. 1
Open Access
Xuejun Wang, Qinghong Lin, Li Tian, et al.
Chinese Medicine (2025) Vol. 20, Iss. 1
Open Access
Exploring the influence of pre-analytical variables on gene expression measurements and relative expression orderings in cancer research
Tian Tian, Guie Lai, Mingxiong He, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Tian Tian, Guie Lai, Mingxiong He, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
BiLSTM-5mC: A Bidirectional Long Short-Term Memory-Based Approach for Predicting 5-Methylcytosine Sites in Genome-Wide DNA Promoters
Xin Cheng, Jun Wang, Qianyue Li, et al.
Molecules (2021) Vol. 26, Iss. 24, pp. 7414-7414
Open Access | Times Cited: 30
Xin Cheng, Jun Wang, Qianyue Li, et al.
Molecules (2021) Vol. 26, Iss. 24, pp. 7414-7414
Open Access | Times Cited: 30
MuLan-Methyl—multiple transformer-based language models for accurate DNA methylation prediction
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
GigaScience (2022) Vol. 12
Open Access | Times Cited: 19
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
GigaScience (2022) Vol. 12
Open Access | Times Cited: 19
Prediction of Multiple Types of RNA Modifications via Biological Language Model
Ying Zhang, Fang Ge, Fuyi Li, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics (2023) Vol. 20, Iss. 5, pp. 3205-3214
Closed Access | Times Cited: 11
Ying Zhang, Fang Ge, Fuyi Li, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics (2023) Vol. 20, Iss. 5, pp. 3205-3214
Closed Access | Times Cited: 11
Protein S-Nitrosylation: A Chemical Modification with Ubiquitous Biological Activities
Adam A. Aboalroub, Khaldun M. Al Azzam
The Protein Journal (2024) Vol. 43, Iss. 4, pp. 639-655
Closed Access | Times Cited: 4
Adam A. Aboalroub, Khaldun M. Al Azzam
The Protein Journal (2024) Vol. 43, Iss. 4, pp. 639-655
Closed Access | Times Cited: 4
DNA N6-Methyladenine Modification in Eukaryotic Genome
Hao Li, Ning Zhang, Yuechen Wang, et al.
Frontiers in Genetics (2022) Vol. 13
Open Access | Times Cited: 18
Hao Li, Ning Zhang, Yuechen Wang, et al.
Frontiers in Genetics (2022) Vol. 13
Open Access | Times Cited: 18
DaDL-SChlo: protein subchloroplast localization prediction based on generative adversarial networks and pre-trained protein language model
Xiao Wang, Lijun Han, Rong Wang, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 3
Closed Access | Times Cited: 10
Xiao Wang, Lijun Han, Rong Wang, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 3
Closed Access | Times Cited: 10
Identification of disulfidptosis-related subtypes, characterization of tumor microenvironment infiltration, and development of a prognosis model in colorectal cancer
Ying Li, Mengyao Tang, Wei Dang, et al.
Journal of Cancer Research and Clinical Oncology (2023) Vol. 149, Iss. 15, pp. 13995-14014
Closed Access | Times Cited: 9
Ying Li, Mengyao Tang, Wei Dang, et al.
Journal of Cancer Research and Clinical Oncology (2023) Vol. 149, Iss. 15, pp. 13995-14014
Closed Access | Times Cited: 9
Application progress of deep generative models in de novo drug design
Yingxu Liu, Chengcheng Xu, Xinyi Yang, et al.
Molecular Diversity (2024) Vol. 28, Iss. 4, pp. 2411-2427
Closed Access | Times Cited: 3
Yingxu Liu, Chengcheng Xu, Xinyi Yang, et al.
Molecular Diversity (2024) Vol. 28, Iss. 4, pp. 2411-2427
Closed Access | Times Cited: 3
iProm-Zea: A two-layer model to identify plant promoters and their types using convolutional neural network
Jeehong Kim, Muhammad Shujaat, Hilal Tayara
Genomics (2022) Vol. 114, Iss. 3, pp. 110384-110384
Open Access | Times Cited: 12
Jeehong Kim, Muhammad Shujaat, Hilal Tayara
Genomics (2022) Vol. 114, Iss. 3, pp. 110384-110384
Open Access | Times Cited: 12
MetalTrans: A Biological Language Model-Based Approach for Predicting Disease-Associated Mutations in Protein Metal-Binding Sites
Ming Zhang, Xiaohua Wang, Shanruo Xu, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 15, pp. 6216-6229
Closed Access | Times Cited: 2
Ming Zhang, Xiaohua Wang, Shanruo Xu, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 15, pp. 6216-6229
Closed Access | Times Cited: 2
Multi-label classification to predict antibiotic resistance from raw clinical MALDI-TOF mass spectrometry data
César A. Astudillo, Xaviera A. López-Cortés, Elias Ocque, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 2
César A. Astudillo, Xaviera A. López-Cortés, Elias Ocque, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 2
AURKA is a prognostic potential therapeutic target in skin cutaneous melanoma modulating the tumor microenvironment, apoptosis, and hypoxia
ShengYong Long, Xuan Fen Zhang
Journal of Cancer Research and Clinical Oncology (2022) Vol. 149, Iss. 7, pp. 3089-3107
Open Access | Times Cited: 12
ShengYong Long, Xuan Fen Zhang
Journal of Cancer Research and Clinical Oncology (2022) Vol. 149, Iss. 7, pp. 3089-3107
Open Access | Times Cited: 12
MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Wenhuan Zeng, Anupam Gautam, Daniel H. Huson
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
I-DNAN6mA: Accurate Identification of DNA N6-Methyladenine Sites Using the Base-Pairing Map and Deep Learning
Xueqiang Fan, Bing Lin, Jun Hu, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 3, pp. 1076-1086
Closed Access | Times Cited: 5
Xueqiang Fan, Bing Lin, Jun Hu, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 3, pp. 1076-1086
Closed Access | Times Cited: 5
