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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Computational prediction and interpretation of cell-specific replication origin sites from multiple eukaryotes by exploiting stacking framework
Leyi Wei, Wenjia He, Adeel Malik, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 4
Closed Access | Times Cited: 107

Showing 1-25 of 107 citing articles:

BERT4Bitter: a bidirectional encoder representations from transformers (BERT)-based model for improving the prediction of bitter peptides
Phasit Charoenkwan, Chanin Nantasenamat, Md Mehedi Hasan, et al.
Bioinformatics (2021) Vol. 37, Iss. 17, pp. 2556-2562
Closed Access | Times Cited: 133
StackIL6: a stacking ensemble model for improving the prediction of IL-6 inducing peptides
Phasit Charoenkwan, Wararat Chiangjong, Chanin Nantasenamat, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Closed Access | Times Cited: 109
sAMPpred-GAT: prediction of antimicrobial peptide by graph attention network and predicted peptide structure
Ke Yan, Hongwu Lv, Yichen Guo, et al.
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 109
MLCPP 2.0: An Updated Cell-penetrating Peptides and Their Uptake Efficiency Predictor
Balachandran Manavalan, Mahesh Chandra Patra
Journal of Molecular Biology (2022) Vol. 434, Iss. 11, pp. 167604-167604
Closed Access | Times Cited: 69
Accurately identifying hemagglutinin using sequence information and machine learning methods
Xidan Zou, Liping Ren, Peiling Cai, et al.
Frontiers in Medicine (2023) Vol. 10
Open Access | Times Cited: 64
ERNIE-ac4C: A novel deep learning model for effectively predicting N4-acetylcytidine sites
Ronglin Lu, Jianbo Qiao, Kaixiang Li, et al.
Journal of Molecular Biology (2025), pp. 168978-168978
Closed Access | Times Cited: 1
NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning
Md Mehedi Hasan, Md. Ashad Alam, Watshara Shoombuatong, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Closed Access | Times Cited: 75
DeepIPs: comprehensive assessment and computational identification of phosphorylation sites of SARS-CoV-2 infection using a deep learning-based approach
Hao Lv, Fanny Dao, Hasan Zulfiqar, et al.
Briefings in Bioinformatics (2021)
Open Access | Times Cited: 75
STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction
Shaherin Basith, Gwang Lee, Balachandran Manavalan
Briefings in Bioinformatics (2021) Vol. 23, Iss. 1
Open Access | Times Cited: 71
Deepm5C: A deep-learning-based hybrid framework for identifying human RNA N5-methylcytosine sites using a stacking strategy
Md Mehedi Hasan, Sho Tsukiyama, Jae Youl Cho, et al.
Molecular Therapy (2022) Vol. 30, Iss. 8, pp. 2856-2867
Open Access | Times Cited: 61
StackDPPIV: A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptides
Phasit Charoenkwan, Chanin Nantasenamat, Md Mehedi Hasan, et al.
Methods (2021) Vol. 204, pp. 189-198
Closed Access | Times Cited: 58
THRONE: A New Approach for Accurate Prediction of Human RNA N7-Methylguanosine Sites
Watshara Shoombuatong, Shaherin Basith, Thejkiran Pitti, et al.
Journal of Molecular Biology (2022) Vol. 434, Iss. 11, pp. 167549-167549
Closed Access | Times Cited: 48
MLACP 2.0: An updated machine learning tool for anticancer peptide prediction
Le Thi Phan, Hyun Woo Park, Thejkiran Pitti, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 4473-4480
Open Access | Times Cited: 47
TACOS: a novel approach for accurate prediction of cell-specific long noncoding RNAs subcellular localization
Young-Jun Jeon, Md Mehedi Hasan, Hyun Woo Park, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 4
Open Access | Times Cited: 42
PLANNER: A Multi-Scale Deep Language Model for the Origins of Replication Site Prediction
Cong Wang, Zhijie He, Runchang Jia, et al.
IEEE Journal of Biomedical and Health Informatics (2024) Vol. 28, Iss. 4, pp. 2445-2454
Closed Access | Times Cited: 7
Deep-4mCW2V: A sequence-based predictor to identify N4-methylcytosine sites in Escherichia coli
Hasan Zulfiqar, Zi‐Jie Sun, Qin-Lai Huang, et al.
Methods (2021) Vol. 203, pp. 558-563
Closed Access | Times Cited: 53
Integrative machine learning framework for the identification of cell-specific enhancers from the human genome
Shaherin Basith, Md Mehedi Hasan, Gwang Lee, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Closed Access | Times Cited: 51
Porpoise: a new approach for accurate prediction of RNA pseudouridine sites
Fuyi Li, Xudong Guo, Peipei Jin, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Open Access | Times Cited: 50
Identification of cyclin protein using gradient boost decision tree algorithm
Hasan Zulfiqar, Shi-Shi Yuan, Qin-Lai Huang, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 4123-4131
Open Access | Times Cited: 50
A sequence-based prediction of Kruppel-like factors proteins using XGBoost and optimized features
Nguyen Quoc Khanh Le, Duyen Thi, Trinh‐Trung‐Duong Nguyen, et al.
Gene (2021) Vol. 787, pp. 145643-145643
Closed Access | Times Cited: 48
AniAMPpred: artificial intelligence guided discovery of novel antimicrobial peptides in animal kingdom
Ritesh Sharma, Sameer Shrivastava, Sanjay Kumar Singh, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 6
Closed Access | Times Cited: 47
Learning embedding features based on multisense-scaled attention architecture to improve the predictive performance of anticancer peptides
Wenjia He, Yu Wang, Lizhen Cui, et al.
Bioinformatics (2021) Vol. 37, Iss. 24, pp. 4684-4693
Closed Access | Times Cited: 42
Towards a better prediction of subcellular location of long non-coding RNA
Zhao‐Yue Zhang, Zi‐Jie Sun, Yuhe Yang, et al.
Frontiers of Computer Science (2022) Vol. 16, Iss. 5
Closed Access | Times Cited: 35
Accurate Identification of DNA Replication Origin by Fusing Epigenomics and Chromatin Interaction Information
Fanny Dao, Hao Lv, Melissa J. Fullwood, et al.
Research (2022) Vol. 2022
Open Access | Times Cited: 33
AMPpred-EL: An effective antimicrobial peptide prediction model based on ensemble learning
Hongwu Lv, Ke Yan, Yichen Guo, et al.
Computers in Biology and Medicine (2022) Vol. 146, pp. 105577-105577
Closed Access | Times Cited: 28
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