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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A practical guide to mechanistic systems modeling in biology using a logic-based approach
Anna Niarakis, Tomáš Helikar
Briefings in Bioinformatics (2020) Vol. 22, Iss. 4
Open Access | Times Cited: 28

Showing 1-25 of 28 citing articles:

Building digital twins of the human immune system: toward a roadmap
Reinhard Laubenbacher, Anna Niarakis, Tomáš Helikar, et al.
npj Digital Medicine (2022) Vol. 5, Iss. 1
Open Access | Times Cited: 88
Boolean modelling as a logic-based dynamic approach in systems medicine
Ahmed Abdelmonem Hemedan, Anna Niarakis, Reinhard Schneider, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 3161-3172
Open Access | Times Cited: 38
Recent applications of quantitative systems pharmacology and machine learning models across diseases
Sara Sadat Aghamiri, Rada Amin, Tomáš Helikar
Journal of Pharmacokinetics and Pharmacodynamics (2021) Vol. 49, Iss. 1, pp. 19-37
Open Access | Times Cited: 41
Intervention Approaches in Studying the Response to Vitamin D3 Supplementation
Emilia Gospodarska, Ranjini Ghosh Dastidar, Carsten Carlberg
Nutrients (2023) Vol. 15, Iss. 15, pp. 3382-3382
Open Access | Times Cited: 17
Forum on immune digital twins: a meeting report
Reinhard Laubenbacher, Fred Adler, Gary An, et al.
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 7
A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint
Vidisha Singh, Aurélien Naldi, Sylvain Soliman, et al.
npj Systems Biology and Applications (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 13
Unlocking secrets of microbial ecotoxicology: recent achievements and future challenges
Jennifer Hellal, Lise Barthelmebs, Annette Bérard, et al.
FEMS Microbiology Ecology (2023) Vol. 99, Iss. 10
Open Access | Times Cited: 11
A Mechanistic Cellular Atlas of the Rheumatic Joint
Naouel Zerrouk, Sahar Aghakhani, Vidisha Singh, et al.
Frontiers in Systems Biology (2022) Vol. 2
Open Access | Times Cited: 12
Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map
Quentin Miagoux, Vidisha Singh, Dereck de Mézquita, et al.
Journal of Personalized Medicine (2021) Vol. 11, Iss. 8, pp. 785-785
Open Access | Times Cited: 14
Data integration in logic-based models of biological mechanisms
Benjamin A. Hall, Anna Niarakis
Current Opinion in Systems Biology (2021) Vol. 28, pp. 100386-100386
Open Access | Times Cited: 12
A multiscale mechanistic model of human dendritic cells for in-silico investigation of immune responses and novel therapeutics discovery
Sara Sadat Aghamiri, Bhanwar Lal Puniya, Rada Amin, et al.
Frontiers in Immunology (2023) Vol. 14
Open Access | Times Cited: 4
Concepts of multi-level dynamical modelling: understanding mechanisms of squamous cell carcinoma development in Fanconi anemia
Eunike Velleuer, Elisa Domínguez‐Hüttinger, Alfredo Rodríguez, et al.
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 4
Unsupervised logic-based mechanism inference for network-driven biological processes
Martina Prugger, Lukas Einkemmer, Samantha Beik, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 6, pp. e1009035-e1009035
Open Access | Times Cited: 5
Boolean network modeling and its integration with experimental read-outs
Julia Maier, Julian Schwab, Silke D Werle, et al.
Deleted Journal (2024)
Closed Access
Building a modular and multi-cellular virtual twin of the synovial joint in Rheumatoid Arthritis
Naouel Zerrouk, Franck Augé, Anna Niarakis
npj Digital Medicine (2024) Vol. 7, Iss. 1
Open Access
Inference of an integrative, executable network for Rheumatoid Arthritis combining data-driven machine learning approaches and a state-of-the-art mechanistic disease map
Quentin Miagoux, Vidisha Singh, Dereck Mezquita, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 4
Data Integration in Logic-based Models of Biological Mechanisms
Benjamin D. Hall, Anna Niarakis
(2021)
Open Access | Times Cited: 4
Animal Models for Cancer Research: The Choice of the Right Model System
Sinan Kandir
Handbook of Animal Models and its Uses in Cancer Research (2023), pp. 49-63
Closed Access | Times Cited: 1
Data Integration in Logic-based Models of Biological Mechanisms
Benjamin A. Hall, Anna Niarakis
(2021)
Open Access | Times Cited: 3
The Need for Research-Grade Systems Modeling Technologies for Life Science Education
Tomáš Helikar
Trends in Molecular Medicine (2020) Vol. 27, Iss. 2, pp. 100-103
Open Access | Times Cited: 2
A large-scale Boolean model of the Rheumatoid Arthritis Fibroblast-Like Synoviocytes predicts drug synergies in the arthritic joint
Vidisha Singh, Aurélien Naldi, Sylvain Soliman, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
PseudoCell: A Multi-Valued Logical Regulatory Network to Investigate Premature Senescence Dynamics and Heterogeneity
Vinícius Pierdoná Lima, Patrícia Lavandoski, Rafael Moura Maurmann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Concepts of multi-level dynamical modelling: Understanding mechanisms of squamous cell carcinoma development in Fanconi anemia
Eunike Velleuer, Elisa Domínguez‐Hüttinger, Alfredo Rodríguez, et al.
Authorea (Authorea) (2023)
Open Access
Modelling of postprandial glucose and insulin dynamics
Bart Johannes Hendrikus van Sloun
(2023)
Open Access
Forum on immune digital twins: a meeting report
Reinhard Laubenbacher, Fred Adler, Gary An, et al.
arXiv (Cornell University) (2023)
Open Access
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