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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Sequence representation approaches for sequence-based protein prediction tasks that use deep learning
Feifei Cui, Zilong Zhang, Quan Zou
Briefings in Functional Genomics (2020) Vol. 20, Iss. 1, pp. 61-73
Closed Access | Times Cited: 61

Showing 1-25 of 61 citing articles:

Biological Sequence Classification: A Review on Data and General Methods
Chunyan Ao, Shihu Jiao, Yansu Wang, et al.
Research (2022) Vol. 2022
Open Access | Times Cited: 70
iFeatureOmega:an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets
Zhen Chen, Xuhan Liu, Pei Zhao, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W434-W447
Open Access | Times Cited: 57
TPpred-ATMV: therapeutic peptide prediction by adaptive multi-view tensor learning model
Ke Yan, Hongwu Lv, Yichen Guo, et al.
Bioinformatics (2022) Vol. 38, Iss. 10, pp. 2712-2718
Closed Access | Times Cited: 49
AGF-PPIS: A protein–protein interaction site predictor based on an attention mechanism and graph convolutional networks
Xiuhao Fu, Ye Yuan, Haoye Qiu, et al.
Methods (2024) Vol. 222, pp. 142-151
Closed Access | Times Cited: 11
PSAC-6mA: 6mA site identifier using self-attention capsule network based on sequence-positioning
Zheyu Zhou, Cuilin Xiao, Jinfen Yin, et al.
Computers in Biology and Medicine (2024) Vol. 171, pp. 108129-108129
Closed Access | Times Cited: 8
Mechanisms and Advances of Epigenetic Regulation in Cardiovascular Disease
Xiaojun Wang, Xusheng Teng, Chao Luo, et al.
Frontiers in Bioscience-Landmark (2024) Vol. 29, Iss. 6
Open Access | Times Cited: 8
Therapeutic Peptide Development Revolutionized: Harnessing the Power of Artificial Intelligence for Drug Discovery
Samaneh Hashemi, Parisa Vosough, Saeed Taghizadeh, et al.
Heliyon (2024) Vol. 10, Iss. 22, pp. e40265-e40265
Open Access | Times Cited: 8
Improved Prediction Model of Protein Lysine Crotonylation Sites Using Bidirectional Recurrent Neural Networks
Sian Soo Tng, Nguyen Quoc Khanh Le, Hui‐Yuan Yeh, et al.
Journal of Proteome Research (2021) Vol. 21, Iss. 1, pp. 265-273
Closed Access | Times Cited: 54
Protein–DNA/RNA interactions: Machine intelligence tools and approaches in the era of artificial intelligence and big data
Feifei Cui, Zilong Zhang, Chen Cao, et al.
PROTEOMICS (2022) Vol. 22, Iss. 8
Closed Access | Times Cited: 30
A Review of Deep Learning-Based Approaches for Detection and Diagnosis of Diverse Classes of Drugs
Ashish Kumar, Nishant Kumar, Jeril Kuriakose, et al.
Archives of Computational Methods in Engineering (2023) Vol. 30, Iss. 6, pp. 3867-3889
Closed Access | Times Cited: 16
A novel positional encoded attention-based Long short-term memory network for state of charge estimation of lithium-ion battery
Syed Abbas Ali Shah, Sajawal Gul Niazi, Shangqi Deng, et al.
Journal of Power Sources (2023) Vol. 590, pp. 233788-233788
Closed Access | Times Cited: 16
msBERT-Promoter: a multi-scale ensemble predictor based on BERT pre-trained model for the two-stage prediction of DNA promoters and their strengths
Yazi Li, Xiaoman Wei, Qinglin Yang, et al.
BMC Biology (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 7
DeepMC-iNABP: Deep learning for multiclass identification and classification of nucleic acid-binding proteins
Feifei Cui, Shuang Li, Zilong Zhang, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 2020-2028
Open Access | Times Cited: 24
Deep learning guided prediction modeling of dengue virus evolving serotype
Zilwa Mumtaz, Zubia Rashid, Rashid Saif, et al.
Heliyon (2024) Vol. 10, Iss. 11, pp. e32061-e32061
Open Access | Times Cited: 5
Overview and Prospects of DNA Sequence Visualization
Wu Yan, Xiaojun Xie, Jihong Zhu, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 2, pp. 477-477
Open Access
A comprehensive review of deep learning-based approaches for drug–drug interaction prediction
Ying Xia, An Xiong, Zilong Zhang, et al.
Briefings in Functional Genomics (2025) Vol. 24
Open Access
A multimodal model for protein function prediction
Yu Mao, Wenhui Xu, Shun Yue, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Identify Bitter Peptides by Using Deep Representation Learning Features
Jici Jiang, Xinxu Lin, Yueqi Jiang, et al.
International Journal of Molecular Sciences (2022) Vol. 23, Iss. 14, pp. 7877-7877
Open Access | Times Cited: 21
FRP-XGBoost: Identification of ferroptosis-related proteins based on multi-view features
Lin Li, Yao Long, Jinkai Liu, et al.
International Journal of Biological Macromolecules (2024) Vol. 262, pp. 130180-130180
Closed Access | Times Cited: 4
A review of machine learning-based methods for predicting drug–target interactions
Weisong Shi, Hong Yang, Linhai Xie, et al.
Health Information Science and Systems (2024) Vol. 12, Iss. 1
Closed Access | Times Cited: 4
Deep-Representation-Learning-Based Classification Strategy for Anticancer Peptides
Shujaat Khan
Mathematics (2024) Vol. 12, Iss. 9, pp. 1330-1330
Open Access | Times Cited: 4
MultiFeatVotPIP: a voting-based ensemble learning framework for predicting proinflammatory peptides
Chaorui Yan, Aoyun Geng, Zhuoyu Pan, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 4
Deep Neural Networks Based on Sp7 Protein Sequence Prediction in Peri‐Implant Bone Formation
Pradeep Kumar, Carlos M. Ardila
International Journal of Dentistry (2025) Vol. 2025, Iss. 1
Open Access
MFD–GDrug: multimodal feature fusion-based deep learning for GPCR–drug interaction prediction
Xingyue Gu, Junkai Liu, Yue Yu, et al.
Methods (2024) Vol. 223, pp. 75-82
Closed Access | Times Cited: 3
DPNN-ac4C: A Dual-Path Neural Network with self-attention mechanism for identification of N4‑acetylcytidine (ac4C) in mRNA
Jiahao Yuan, Ziyi Wang, Zhuoyu Pan, et al.
Bioinformatics (2024) Vol. 40, Iss. 11
Open Access | Times Cited: 3
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