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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SCOT: Single-Cell Multi-Omics Alignment with Optimal Transport
Pınar Demetçi, Rebecca Santorella, Björn Sandstede, et al.
Journal of Computational Biology (2022) Vol. 29, Iss. 1, pp. 3-18
Open Access | Times Cited: 80

Showing 1-25 of 80 citing articles:

Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 496
Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
Zhi‐Jie Cao, Ge Gao
Nature Biotechnology (2022) Vol. 40, Iss. 10, pp. 1458-1466
Open Access | Times Cited: 305
Multi-omics integration in the age of million single-cell data
Zhen Miao, Benjamin D. Humphreys, Andrew P. McMahon, et al.
Nature Reviews Nephrology (2021) Vol. 17, Iss. 11, pp. 710-724
Open Access | Times Cited: 155
Alignment and integration of spatial transcriptomics data
Ron Zeira, Max Land, Alexander Strzalkowski, et al.
Nature Methods (2022) Vol. 19, Iss. 5, pp. 567-575
Open Access | Times Cited: 154
Learning single-cell perturbation responses using neural optimal transport
Charlotte Bunne, Stefan G. Stark, Gabriele Gut, et al.
Nature Methods (2023) Vol. 20, Iss. 11, pp. 1759-1768
Open Access | Times Cited: 52
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 51
Current and future directions in network biology
Marinka Žitnik, Michelle M. Li, A. V. Wells, et al.
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 19
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
Nature (2025)
Open Access | Times Cited: 2
Computational Methods for Single-Cell Multi-Omics Integration and Alignment
Stefan Stanojevic, Yijun Li, Aleksandar Ristivojevic, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 836-849
Open Access | Times Cited: 41
TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics
Simon Mages, Noa Moriel, Inbal Avraham‐Davidi, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 10, pp. 1465-1473
Open Access | Times Cited: 36
Gene trajectory inference for single-cell data by optimal transport metrics
Rihao Qu, Xiuyuan Cheng, Esen Sefik, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 9
scCobra allows contrastive cell embedding learning with domain adaptation for single cell data integration and harmonization
Bowen Zhao, Kailu Song, Dong‐Qing Wei, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access | Times Cited: 1
Is my “red” your “red”?: Evaluating structural correspondences between color similarity judgments using unsupervised alignment
Genji Kawakita, Ariel Zeleznikow-Johnston, Ken Takeda, et al.
iScience (2025) Vol. 28, Iss. 3, pp. 112029-112029
Open Access | Times Cited: 1
Single-cell omics: A new direction for functional genetic research in human diseases and animal models
Siyuan Kong, Rongrong Li, Yun‐Han Tian, et al.
Frontiers in Genetics (2023) Vol. 13
Open Access | Times Cited: 19
Is my "red" your "red"?: Unsupervised alignment of qualia structures via optimal transport
Genji Kawakita, Ariel Zeleznikow-Johnston, Ken Takeda, et al.
(2023)
Open Access | Times Cited: 17
Machine learning integrative approaches to advance computational immunology
Fabiola Curion, Fabian J. Theis
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 5
Mapping lineage-traced cells across time points with moslin
Marius Lange, Zoe Piran, Michal Klein, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
Diagonal integration of multimodal single-cell data: potential pitfalls and paths forward
Yang Xu, Rachel Patton McCord
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 19
Optimal transport for single-cell and spatial omics
Charlotte Bunne, Geoffrey Schiebinger, Andreas Krause, et al.
Nature Reviews Methods Primers (2024) Vol. 4, Iss. 1
Closed Access | Times Cited: 4
DeST-OT: Alignment of spatiotemporal transcriptomics data
Peter Halmos, Xinhao Liu, Julian Gold, et al.
Cell Systems (2025)
Closed Access
Interpretable Data Integration for Single Cell and Spatial Multi-Omics
Chenghui Yang, Zhentao He, Qing Nie, et al.
(2025)
Closed Access
Supervised Gromov–Wasserstein Optimal Transport with Metric-Preserving Constraints
Zixuan Cang, Yaqi Wu, Yanxiang Zhao
SIAM Journal on Mathematics of Data Science (2025) Vol. 7, Iss. 1, pp. 301-328
Open Access
Low Dimensional Representation of Multi‐Patient Flow Cytometry Datasets Using Optimal Transport for Measurable Residual Disease Detection in Leukemia
Erell Gachon, Jérémie Bigot, Elsa Cazelles, et al.
Cytometry Part A (2025)
Open Access
Partially characterized topology guides reliable anchor-free scRNA-integration
Chuan He, Paraskevas Filippidis, Steven H. Kleinstein, et al.
Communications Biology (2025) Vol. 8, Iss. 1
Open Access
Unsupervised alignment in neuroscience: Introducing a toolbox for Gromov-Wasserstein optimal transport
Ken Takeda, Masaru Sasaki, Kota Abe, et al.
Journal of Neuroscience Methods (2025), pp. 110443-110443
Closed Access
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