Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Integrating spatial transcriptomics data across different conditions, technologies and developmental stages
Xiang Zhou, Kangning Dong, Shihua Zhang
Nature Computational Science (2023) Vol. 3, Iss. 10, pp. 894-906
Open Access | Times Cited: 53

Showing 1-25 of 53 citing articles:

Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope
Xiaomeng Wan, Jiashun Xiao, Sindy Sing Ting Tam, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 54
SPACEL: deep learning-based characterization of spatial transcriptome architectures
Hao Xu, Shuyan Wang, Minghao Fang, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 34
SPIRAL: integrating and aligning spatially resolved transcriptomics data across different experiments, conditions, and technologies
Tiantian Guo, Zhiyuan Yuan, Yan Pan, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 25
Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
Yunfei Hu, Manfei Xie, Yikang Li, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 12
Navigating the landscapes of spatial transcriptomics: How computational methods guide the way
Runze Li, Xu Chen, Xuerui Yang
Wiley Interdisciplinary Reviews - RNA (2024) Vol. 15, Iss. 2
Closed Access | Times Cited: 8
Dissecting tumor microenvironment from spatially resolved transcriptomics data by heterogeneous graph learning
Chunman Zuo, Junjie Xia, Luonan Chen
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 8
Spatial transcriptomics: a new frontier in cancer research
Siyuan Huang, Linkun Ouyang, Junjie Tang, et al.
Clinical Cancer Bulletin (2024) Vol. 3, Iss. 1
Open Access | Times Cited: 7
High-density generation of spatial transcriptomics with STAGE
Shang Li, Kuo Gai, Kangning Dong, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 9, pp. 4843-4856
Open Access | Times Cited: 6
Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder
Lei Cao, Chao Yang, Luni Hu, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 5
Computational methods for alignment and integration of spatially resolved transcriptomics data
Yuyao Liu, Can Yang
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1094-1105
Open Access | Times Cited: 5
SpaDiT: diffusion transformer for spatial gene expression prediction using scRNA-seq
Xiaoyu Li, Fangfang Zhu, Wenwen Min
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 5
Computational modeling for deciphering tissue microenvironment heterogeneity from spatially resolved transcriptomics
Chuanchao Zhang, Lequn Wang, Qianqian Shi
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2109-2115
Open Access | Times Cited: 4
Spatial omics advances for in situ RNA biology
Jingyi Ren, Shuchen Luo, Hailing Shi, et al.
Molecular Cell (2024)
Closed Access | Times Cited: 4
STAIG: Spatial transcriptomics analysis via image-aided graph contrastive learning for domain exploration and alignment-free integration
Yitao Yang, Yang Cui, Xin Zeng, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Decoding the blueprints of embryo development with single-cell and spatial omics
Chang Liu, Xuerong Li, Qinan Hu, et al.
Seminars in Cell and Developmental Biology (2025) Vol. 167, pp. 22-39
Open Access
INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation
Yuyao Liu, Zhen Li, Xiaoyang Chen, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Learning Phenotype Associated Signature in Spatial Transcriptomics with PASSAGE
C. Guo, Chen‐Rui Xia, Guangdun Peng, et al.
Small Methods (2025)
Open Access
Multiscale Dissection of Spatial Heterogeneity by Integrating Multi‐Slice Spatial and Single‐Cell Transcriptomics
Yuqi Chen, Caiwei Zhen, Yuanyuan Mo, et al.
Advanced Science (2025)
Open Access
STModule: identifying tissue modules to uncover spatial components and characteristics of transcriptomic landscapes
Ran Wang, Qian Yan, Xiaojing Guo, et al.
Genome Medicine (2025) Vol. 17, Iss. 1
Open Access
From morphology to single-cell molecules: high-resolution 3D histology in biomedicine
Xintian Xu, Jimeng Su, Rongyi Zhu, et al.
Molecular Cancer (2025) Vol. 24, Iss. 1
Open Access
Quantifying and interpreting biologically meaningful spatial signatures within tumor microenvironments
Siyu Jing, He-qi Wang, Ping Lin, et al.
npj Precision Oncology (2025) Vol. 9, Iss. 1
Open Access
Quantitative characterization of cell niches in spatially resolved omics data
Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, et al.
Nature Genetics (2025)
Open Access
AI-driven framework to map the brain metabolome in three dimensions
Xin Ma, Cameron J. Shedlock, Terrymar Medina, et al.
Nature Metabolism (2025)
Closed Access
SpaMask: Dual masking graph autoencoder with contrastive learning for spatial transcriptomics
Wenwen Min, Donghai Fang, Jinyu Chen, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012881-e1012881
Open Access
Integrating multiple spatial transcriptomics data using community-enhanced graph contrastive learning
Wei Tu, Lihua Zhang
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012948-e1012948
Open Access
Page 1 - Next Page

Scroll to top