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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing
Arne M. Taxt, Ekaterina Avershina, Stephan A. Frye, et al.
Scientific Reports (2020) Vol. 10, Iss. 1
Open Access | Times Cited: 95

Showing 1-25 of 95 citing articles:

PLSDB: advancing a comprehensive database of bacterial plasmids
Georges P Schmartz, A. Hartung, Pascal Hirsch, et al.
Nucleic Acids Research (2021) Vol. 50, Iss. D1, pp. D273-D278
Open Access | Times Cited: 153
Fighting Antibiotic Resistance in Hospital-Acquired Infections: Current State and Emerging Technologies in Disease Prevention, Diagnostics and Therapy
Ekaterina Avershina, Valeria Shapovalova, German A. Shipulin
Frontiers in Microbiology (2021) Vol. 12
Open Access | Times Cited: 99
Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge
Dongjuan Dai, Connor Brown, Helmut Bürgmann, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 97
Current and Future Technologies for the Detection of Antibiotic-Resistant Bacteria
Dina Yamin, Vuk Uskoković, Abubakar Muhammad Wakil, et al.
Diagnostics (2023) Vol. 13, Iss. 20, pp. 3246-3246
Open Access | Times Cited: 36
Rapid Methods for Antimicrobial Resistance Diagnostics
Georgia D. Kaprou, Ieva Bergšpica, Elena A. Alexa, et al.
Antibiotics (2021) Vol. 10, Iss. 2, pp. 209-209
Open Access | Times Cited: 97
BugSeq: a highly accurate cloud platform for long-read metagenomic analyses
Jeremy Fan, Steven Huang, Samuel D. Chorlton
BMC Bioinformatics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 56
Antibiotic resistance in plant growth promoting bacteria: A comprehensive review and future perspectives to mitigate potential gene invasion risks
Ismail Mahdi, Nidal Fahsi, Mohamed Hijri, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 36
Ultrafast and Cost-Effective Pathogen Identification and Resistance Gene Detection in a Clinical Setting Using Nanopore Flongle Sequencing
Ekaterina Avershina, Stephan A. Frye, Jawad Ali, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 35
Clinical Diagnostics of Bacterial Infections and Their Resistance to Antibiotics—Current State and Whole Genome Sequencing Implementation Perspectives
Ekaterina Avershina, Abdolrahman Khezri, Rafi Ahmad
Antibiotics (2023) Vol. 12, Iss. 4, pp. 781-781
Open Access | Times Cited: 28
SERS Nanowire Chip and Machine Learning-Enabled Classification of Wild-Type and Antibiotic-Resistant Bacteria at Species and Strain Levels
Sathi Das, Kanchan Saxena, Jean‐Claude Tinguely, et al.
ACS Applied Materials & Interfaces (2023) Vol. 15, Iss. 20, pp. 24047-24058
Open Access | Times Cited: 27
Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsis
Patrick N. A. Harris, Michelle J. Bauer, Lukas Lüftinger, et al.
Microbiology Spectrum (2024) Vol. 12, Iss. 2
Open Access | Times Cited: 11
Comprehensive identification of pathogenic microbes and antimicrobial resistance genes in food products using nanopore sequencing-based metagenomics
Annie Wing-Tung Lee, Iain Chi-Fung Ng, Evelyn Yin-Kwan Wong, et al.
Food Microbiology (2024) Vol. 121, pp. 104493-104493
Open Access | Times Cited: 6
Short turnaround time of seven to nine hours from sample collection until informed decision for sepsis treatment using nanopore sequencing
Jawad Ali, Wenche Johansen, Rafi Ahmad
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 6
Detection of hidden antibiotic resistance through real-time genomics
Ela Sauerborn, Nancy Eliana Corredor Pinzón, Tim Reska, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
The Performance of Nanopore Sequencing in Rapid Detection of Pathogens and Antimicrobial Resistance Genes in Blood Cultures
Wentao Gu, Jing Wang, Xiaohua Qin, et al.
Diagnostic Microbiology and Infectious Disease (2025), pp. 116720-116720
Closed Access
AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae
Ekaterina Avershina, Priyanka Sharma, Arne M. Taxt, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 1896-1906
Open Access | Times Cited: 48
Emerging Options for the Diagnosis of Bacterial Infections and the Characterization of Antimicrobial Resistance
Simone Rentschler, Lars Kaiser, Hans‐Peter Deigner
International Journal of Molecular Sciences (2021) Vol. 22, Iss. 1, pp. 456-456
Open Access | Times Cited: 41
Rapid Detection of Bacterial Pathogens and Antimicrobial Resistance Genes in Clinical Urine Samples With Urinary Tract Infection by Metagenomic Nanopore Sequencing
Lei Zhang, Wenhua Huang, Shengwei Zhang, et al.
Frontiers in Microbiology (2022) Vol. 13
Open Access | Times Cited: 31
Insight into recent advances on nanotechnology-mediated removal of antibiotic resistant bacteria and genes
Debanjali Dey, Shamik Chowdhury, Ramkrishna Sen
Journal of Water Process Engineering (2023) Vol. 52, pp. 103535-103535
Closed Access | Times Cited: 14
Hybrid Assembly Provides Improved Resolution of Plasmids, Antimicrobial Resistance Genes, and Virulence Factors in Escherichia coli and Klebsiella pneumoniae Clinical Isolates
Abdolrahman Khezri, Ekaterina Avershina, Rafi Ahmad
Microorganisms (2021) Vol. 9, Iss. 12, pp. 2560-2560
Open Access | Times Cited: 35
Optimizing Nanopore Sequencing for Rapid Detection of Microbial Species and Antimicrobial Resistance in Patients at Risk of Surgical Site Infections
Emma Whittle, Jennifer A. Yonkus, Patricio Jeraldo, et al.
mSphere (2022) Vol. 7, Iss. 1
Open Access | Times Cited: 22
A culture-, amplification-independent, and rapid method for identification of pathogens and antibiotic resistance profile in bovine mastitis milk
Asal Ahmadi, Abdolrahman Khezri, Håvard Nørstebø, et al.
Frontiers in Microbiology (2023) Vol. 13
Open Access | Times Cited: 13
Highly sensitive quantitative phase microscopy and deep learning aided with whole genome sequencing for rapid detection of infection and antimicrobial resistance
Azeem Ahmad, Ramith Hettiarachchi, Abdolrahman Khezri, et al.
Frontiers in Microbiology (2023) Vol. 14
Open Access | Times Cited: 12
Bacterial enrichment prior to third-generation metagenomic sequencing improves detection of BRD pathogens and genetic determinants of antimicrobial resistance in feedlot cattle
Emily K. Herman, Stacey Lacoste, Claire N. Freeman, et al.
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 3
Limitations of current techniques in clinical antimicrobial resistance diagnosis: examples and future prospects
Jack Hassall, Carmen H. Coxon, Vishal Patel, et al.
npj Antimicrobials and Resistance (2024) Vol. 2, Iss. 1
Open Access | Times Cited: 3
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