Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Ilija Dukovski, Djordje Bajić, Jeremy M. Chacón, et al.
Nature Protocols (2021) Vol. 16, Iss. 11, pp. 5030-5082
Open Access | Times Cited: 122

Showing 1-25 of 122 citing articles:

Ecological modelling approaches for predicting emergent properties in microbial communities
Naomi Iris van den Berg, Daniel Machado, Sophia Santos, et al.
Nature Ecology & Evolution (2022) Vol. 6, Iss. 7, pp. 855-865
Open Access | Times Cited: 129
Metabolic interaction models recapitulate leaf microbiota ecology
Martin Schäfer, Alan R. Pacheco, Rahel Künzler, et al.
Science (2023) Vol. 381, Iss. 6653
Open Access | Times Cited: 63
A study of a diauxic growth experiment using an expanded dynamic flux balance framework
Emil Karlsen, Marianne Gylseth, Christian Schulz, et al.
PLoS ONE (2023) Vol. 18, Iss. 1, pp. e0280077-e0280077
Open Access | Times Cited: 49
Global epistasis on fitness landscapes
Juan Díaz‐Colunga, Abigail Skwara, Karna Gowda, et al.
Philosophical Transactions of the Royal Society B Biological Sciences (2023) Vol. 378, Iss. 1877
Open Access | Times Cited: 37
Modelling microbial communities: Harnessing consortia for biotechnological applications
Maziya Ibrahim, Lavanya Raajaraam, Karthik Raman
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 3892-3907
Open Access | Times Cited: 55
Bioengineered microbial strains for detoxification of toxic environmental pollutants
Quratulain Maqsood, Aleena Sumrin, Rafia Waseem, et al.
Environmental Research (2023) Vol. 227, pp. 115665-115665
Closed Access | Times Cited: 33
A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia
William T. Scott, Sara Benito-Vaquerizo, Johannes Zimmermann, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011363-e1011363
Open Access | Times Cited: 24
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
Miguel Ponce-de-León, Arnau Montagud, Vincent Noël, et al.
npj Systems Biology and Applications (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 23
Predicting microbial interactions with approaches based on flux balance analysis: an evaluation
Clémence Joseph, Haris Zafeiropoulos, Kristel Bernaerts, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 11
Microbial interactions from a new perspective: reinforcement learning reveals new insights into microbiome evolution
Parsa Ghadermazi, Siu Hung Joshua Chan
Bioinformatics (2024) Vol. 40, Iss. 1
Open Access | Times Cited: 9
Deciphering and designing microbial communities by genome-scale metabolic modelling
Shengbo Wu, Zheping Qu, Danlei Chen, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1990-2000
Open Access | Times Cited: 8
Emerging multiscale insights on microbial carbon use efficiency in the land carbon cycle
Xianjin He, Elsa Abs, Steven Allison, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Klara Cerk, Pablo Ugalde‐Salas, Chabname Ghassemi Nedjad, et al.
Microbial Biotechnology (2024) Vol. 17, Iss. 1
Open Access | Times Cited: 6
Deterministic and stochastic processes generating alternative states of microbiomes
Ibuki Hayashi, Hiroaki Fujita, Hirokazu Toju
ISME Communications (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 6
MIGRENE: The Toolbox for Microbial and Individualized GEMs, Reactobiome and Community Network Modelling
Gholamreza Bidkhori, Saeed Shoaie
Metabolites (2024) Vol. 14, Iss. 3, pp. 132-132
Open Access | Times Cited: 6
Advances in functional analysis of the microbiome: Integrating metabolic modeling, metabolite prediction, and pathway inference with Next-Generation Sequencing data
Sungwon Jung
The Journal of Microbiology (2025) Vol. 63, Iss. 1, pp. e:2411006-e:2411006
Closed Access
Guided by the principles of microbiome engineering: Accomplishments and perspectives for environmental use
Haiyang Hu, Miaoxiao Wang, Yiqun Huang, et al.
mLife (2022) Vol. 1, Iss. 4, pp. 382-398
Open Access | Times Cited: 33
Toward merging bottom–up and top–down model-based designing of synthetic microbial communities
David San León, Juan Nogales
Current Opinion in Microbiology (2022) Vol. 69, pp. 102169-102169
Closed Access | Times Cited: 32
SynMADE: synthetic microbiota across diverse ecosystems
Tae Seok Moon
Trends in biotechnology (2022) Vol. 40, Iss. 12, pp. 1405-1414
Open Access | Times Cited: 27
Trade‐offs between the instantaneous growth rate and long‐term fitness: Consequences for microbial physiology and predictive computational models
Frank J. Bruggeman, Bas Teusink, Ralf Steuer
BioEssays (2023) Vol. 45, Iss. 10
Open Access | Times Cited: 16
More is Different: Metabolic Modeling of Diverse Microbial Communities
Christian Diener, Sean M. Gibbons
mSystems (2023) Vol. 8, Iss. 2
Open Access | Times Cited: 15
Metabolic engineering of human gut microbiome: Recent developments and future perspectives
Peishun Li, Stefan Roos, Hao Luo, et al.
Metabolic Engineering (2023) Vol. 79, pp. 1-13
Open Access | Times Cited: 15
The optimization of microbial functions through rational environmental manipulations
Álvaro Sánchez, Andrea Arrabal, Magdalena San Román, et al.
Molecular Microbiology (2024) Vol. 122, Iss. 3, pp. 294-303
Open Access | Times Cited: 5
Microbial evolution—An under‐appreciated driver of soil carbon cycling
Elsa Abs, Alexander B. Chase, Stefano Manzoni, et al.
Global Change Biology (2024) Vol. 30, Iss. 4
Open Access | Times Cited: 5
Review on computer-assisted biosynthetic capacities elucidation to assess metabolic interactions and communication within microbial communities
Mahnoor Zulfiqar, Vinay Singh, Christoph Steinbeck, et al.
Critical Reviews in Microbiology (2024), pp. 1-40
Open Access | Times Cited: 4
Page 1 - Next Page

Scroll to top