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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
Nature Methods (2024)
Open Access | Times Cited: 51

Showing 1-25 of 51 citing articles:

OME-Zarr: a cloud-optimized bioimaging file format with international community support
Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, et al.
Histochemistry and Cell Biology (2023) Vol. 160, Iss. 3, pp. 223-251
Open Access | Times Cited: 63
Spatial landscapes of cancers: insights and opportunities
Julia Chen, Ludvig Larsson, Alexander Swarbrick, et al.
Nature Reviews Clinical Oncology (2024) Vol. 21, Iss. 9, pp. 660-674
Closed Access | Times Cited: 16
Vitessce: integrative visualization of multimodal and spatially resolved single-cell data
Mark S. Keller, Ilan Gold, Chuck McCallum, et al.
Nature Methods (2024)
Open Access | Times Cited: 13
How to build the virtual cell with artificial intelligence: Priorities and opportunities
Charlotte Bunne, Yusuf Roohani, Yanay Rosen, et al.
Cell (2024) Vol. 187, Iss. 25, pp. 7045-7063
Open Access | Times Cited: 13
WebAtlas pipeline for integrated single-cell and spatial transcriptomic data
Tong Li, Dave Horsfall, Daniela Basurto-Lozada, et al.
Nature Methods (2024)
Closed Access | Times Cited: 12
Sopa: a technology-invariant pipeline for analyses of image-based spatial omics
Quentin Blampey, Kevin Mulder, Margaux Gardet, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 9
Enablers and challenges of spatial omics, a melting pot of technologies
Theodore Alexandrov, Julio Sáez-Rodríguez, Sinem K. Saka
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 17
Machine learning integrative approaches to advance computational immunology
Fabiola Curion, Fabian J. Theis
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 5
Geospatially informed representation of spatial genomics data with SpatialFeatureExperiment
Lambda Moses, Alik Huseynov, Joseph M. Rich, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies
Eleanor C Williams, Lovisa Franzén, Martina Olsson Lindvall, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Growth of the maternal intestine during reproduction
Tomotsune Ameku, Anna Laddach, Hannah Beckwith, et al.
Cell (2025)
Open Access
MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics
Naomi Martin, Paul Olsen, Jacob Quon, et al.
(2025)
Open Access
MerQuaCo: a computational tool for quality control in image-based spatial transcriptomics
Naomi Martin, Paul Olsen, Jacob Quon, et al.
(2025)
Open Access
Computational pathology: A comprehensive review of recent developments in digital and intelligent pathology
Qinqin Huang, Sean M. Wu, Zhenyu Ou, et al.
(2025)
Closed Access
A practical guide to spatial transcriptomics
Lukás Valihrach, Daniel Žucha, Pavel Abaffy, et al.
Molecular Aspects of Medicine (2024) Vol. 97, pp. 101276-101276
Closed Access | Times Cited: 4
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 4
Towards deciphering the bone marrow microenvironment with spatial multi-omics
Raymond K. H. Yip, Edwin D. Hawkins, Bowden Rory, et al.
Seminars in Cell and Developmental Biology (2025) Vol. 167, pp. 10-21
Closed Access
Application of Spatial Omics in the Cardiovascular System
Yuhong Hu, Hao Jia, Hao Cui, et al.
Research (2025) Vol. 8
Open Access
Easydecon: A Lightweight Workflow for Cell Type Analysis in High-Definition Spatial Transcriptomics Assays
Sinan U. Umu, Victoria T. Karlsen, Espen S. Bækkevold, et al.
(2025)
Open Access
A standard for sharing spatial transcriptomics data
Kayla Jackson, Lior Pachter
Cell Genomics (2023) Vol. 3, Iss. 8, pp. 100374-100374
Open Access | Times Cited: 9
SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis
Gohta Aihara, Kalen Clifton, Mayling Chen, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access | Times Cited: 3
Predictive analyses of regulatory sequences with EUGENe
Adam Klie, David Laub, James Talwar, et al.
Nature Computational Science (2023) Vol. 3, Iss. 11, pp. 946-956
Open Access | Times Cited: 7
cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data
Lasse Meyer, Nils Eling, Bernd Bodenmiller
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image Data
Nikki Bialy, Frank Alber, Brenda Andrews, et al.
arXiv (Cornell University) (2024)
Open Access | Times Cited: 2
A perspective on FAIR quality control in multiplexed imaging data processing
Wouter-Michiel Vierdag, Sinem K. Saka
Frontiers in Bioinformatics (2024) Vol. 4
Open Access | Times Cited: 2
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