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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Challenges and perspectives in computational deconvolution of genomics data
Lana X. Garmire, Yijun Li, Qianhui Huang, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 391-400
Open Access | Times Cited: 20

Showing 20 citing articles:

Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Gunsagar S. Gulati, Jeremy Philip D’Silva, Yunhe Liu, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 26, Iss. 1, pp. 11-31
Closed Access | Times Cited: 31
Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets
Sean K. Maden, Sang Ho Kwon, Louise A. Huuki-Myers, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 24
Spatiotemporal metabolomic approaches to the cancer-immunity panorama: a methodological perspective
Yang Xiao, Yongsheng Li, Huakan Zhao
Molecular Cancer (2024) Vol. 23, Iss. 1
Open Access | Times Cited: 6
Heterogeneous pseudobulk simulation enables realistic benchmarking of cell-type deconvolution methods
Mengying Hu, Maria Chikina
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
CATD: a reproducible pipeline for selecting cell-type deconvolution methods across tissues
Anna Vathrakokoili Pournara, Zhichao Miao, Ozgur Yilimaz Beker, et al.
Bioinformatics Advances (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 4
SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics
Asish Kumar Swain, Vrushali Pandit, Jyoti Sharma, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 4
Mini Review: Spatial Transcriptomics to Decode the Central Nervous System
Benedek Pesti, Xavi Langa, Nadine Kumpesa, et al.
Toxicologic Pathology (2025)
Closed Access
Spatial omics for accelerating plant research and crop improvement
Rutwik Barmukh, Vanika Garg, Hao Liu, et al.
Trends in biotechnology (2025)
Closed Access
Benchmarking second-generation methods for cell-type deconvolution of transcriptomic data
Alexander Dietrich, Lorenzo Merotto, K. Pelz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
InstaPrism: an R package for fast implementation of BayesPrism
Mengying Hu, Maria Chikina
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access | Times Cited: 3
Comparing Microbial Source Tracking Methods for Precision and Reliability
Lingling An
International Journal of Forensic Sciences (2024) Vol. 9, Iss. 1, pp. 1-8
Open Access | Times Cited: 1
MIF as a potential diagnostic and prognostic biomarker for triple‐negative breast cancer that correlates with the polarization of M2 macrophages
Mengting Chen, Hongsen Liu, Bo Hong, et al.
The FASEB Journal (2024) Vol. 38, Iss. 10
Open Access | Times Cited: 1
Apollo: A comprehensive GPU-powered within-host simulator for viral evolution and infection dynamics across population, tissue, and cell
Deshan Perera, E.J.Q. Li, Frank van der Meer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
A robust workflow to benchmark deconvolution of multi-omic data
Elise Amblard, Vincent Bertrand, Luis Manuel Peña, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Spatial-DC: a robust deep learning-based method for deconvolution of spatial proteomics
Yuan Li, Qian Kong, Zihan Wu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Alleviating batch effects in cell type deconvolution with SCCAF-D
Shuo Feng, Liangfeng Huang, Anna Vathrakokoili Pournara, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access
Fibroblast activation protein defines aggressive EMT-associated cancer cell state and prognosis in localized ccRCC
Teijo Pellinen, Lassi Luomala, Kalle Mattila, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Exploring the role of different cell types on cortical folding in the developing human brain through computational modeling
Mohammad Saeed Zarzor, Qiang Ma, Median Almurey, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Closed Access
DECA: harnessing interpretable transformer model for cellular deconvolution of chromatin accessibility profile
Shijie Luo, Ming Zhu, Liquan Lin, et al.
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access
CATD: A reproducible pipeline for selecting cell-type deconvolution methods across tissues
Anna Vathrakokoili Pournara, Zhichao Miao, Ozgur Yilimaz Beker, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
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