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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Unsupervised and supervised discovery of tissue cellular neighborhoods from cell phenotypes
Yuxuan Hu, Jiazhen Rong, Yafei Xu, et al.
Nature Methods (2024) Vol. 21, Iss. 2, pp. 267-278
Open Access | Times Cited: 25

Showing 25 citing articles:

Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Gunsagar S. Gulati, Jeremy Philip D’Silva, Yunhe Liu, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 26, Iss. 1, pp. 11-31
Closed Access | Times Cited: 31
Quantifying and interpreting biologically meaningful spatial signatures within tumor microenvironments
Siyu Jing, He-qi Wang, Ping Lin, et al.
npj Precision Oncology (2025) Vol. 9, Iss. 1
Open Access
Roles of Cellular Neighborhoods in Hepatocellular Carcinoma Pathogenesis
Lichun Ma, C Li, Xin Wei Wang
Annual Review of Pathology Mechanisms of Disease (2025) Vol. 20, Iss. 1, pp. 169-192
Closed Access
Identification and characterization of cell niches in tissue from spatial omics data at single-cell resolution
Jingyang Qian, Xin Shao, Hudong Bao, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Tumor cell villages define the co-dependency of tumor and microenvironment in liver cancer
Meng Liu, Maria O. Hernandez, Darko Castven, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
AI‐Guided Design of Antimicrobial Peptide Hydrogels for Precise Treatment of Drug‐resistant Bacterial Infections
Zhihui Jiang, Jianwen Feng, Fan Wang, et al.
Advanced Materials (2025)
Closed Access
Quantitative characterization of tissue states using multiomics and ecological spatial analysis
Daisy Yi Ding, Zeyu Tang, Bokai Zhu, et al.
Nature Genetics (2025)
Open Access
Points2Regions: Fast, interactive clustering of imaging‐based spatial transcriptomics data
Axel Andersson, Andrea Beháňová, Christophe Avenel, et al.
Cytometry Part A (2024) Vol. 105, Iss. 9, pp. 677-687
Open Access | Times Cited: 3
Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis
Wen Wang, Shiwei Zheng, Sujung Crystal Shin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Deciphering brain cellular and behavioral mechanisms: Insights from single‐cell and spatial RNA sequencing
Renrui Chen, Pengxing Nie, Jing Wang, et al.
Wiley Interdisciplinary Reviews - RNA (2024) Vol. 15, Iss. 4
Closed Access | Times Cited: 1
Graph pooling in graph neural networks: methods and their applications in omics studies
Yan Wang, Wenju Hou, Nan Sheng, et al.
Artificial Intelligence Review (2024) Vol. 57, Iss. 11
Open Access | Times Cited: 1
Next‐generation spatial transcriptomics: unleashing the power to gear up translational oncology
Nan Wang, Weifeng Hong, Yixing Wu, et al.
MedComm (2024) Vol. 5, Iss. 10
Open Access | Times Cited: 1
Hypergraph-based Multi-instance Contrastive Reinforcement Learning for Annotation-free Pan-cancer Survival Prediction on Whole Slide Histology Images
Cheng Lu, Chao Tang, Yanfen Cui, et al.
Research Square (Research Square) (2024)
Open Access | Times Cited: 1
Learning Collective Cell Migratory Dynamics from a Static Snapshot with Graph Neural Networks
Haiqian Yang, Florian Meyer, Shaoxun Huang, et al.
PRX Life (2024) Vol. 2, Iss. 4
Open Access | Times Cited: 1
Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
Bokai Zhu, Sheng Gao, Shuxiao Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Scalable Condition-relevant Cell Niche Analysis of Spatial Omics Data with Taichi
Yan Cui, Zhiyuan Yuan
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
SCIITensor: A tensor decomposition based algorithm to construct actionable TME modules with spatially resolved intercellular communications
Huaqiang Huang, Chuandong Liu, Xin Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Biophysical Simulation Enables Multi-Scale Segmentation and Atlas Mapping for Top-Down Spatial Omics of the Nervous System
L. Ali, Aldrin Kay‐Yuen Yim, Thien Nguyen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Harmonic representations of regions and interactions in spatial transcriptomics
Kamal Maher, Xiao Wang
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Decoding Spatial Tissue Architecture: A Scalable Bayesian Topic Model for Multiplexed Imaging Analysis
Xiyu Peng, James W. Smithy, Mohammad Yosofvand, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
MuSpAn: A Toolbox for Multiscale Spatial Analysis
Joshua A. Bull, Joshua W. Moore, Eoghan J. Mulholland, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Spatially resolved multiomics: data analysis from monoomics to multiomics
Changxiang Huan, Jinze Li, Yingxue Li, et al.
BME Frontiers (2024) Vol. 6
Open Access
Graph pooling for graph-level representation learning: a survey
Zhipeng Li, Siguo Wang, Qinhu Zhang, et al.
Artificial Intelligence Review (2024) Vol. 58, Iss. 2
Open Access
A Robust Kernel‐Based Workflow for Niche Trajectory Analysis
Wen Wang, Sujung Crystal Shin, Joselyn Chávez, et al.
Small Methods (2024)
Closed Access
Points2Regions: Fast Interactive Clustering ofin SituTranscriptomics Data
Axel Andersson, Andrea Beháňová, Christophe Avenel, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 2
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