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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Principles and challenges of modeling temporal and spatial omics data
Britta Velten, Oliver Stegle
Nature Methods (2023) Vol. 20, Iss. 10, pp. 1462-1474
Closed Access | Times Cited: 38

Showing 1-25 of 38 citing articles:

The evolution of developmental biology through conceptual and technological revolutions
Prisca Liberali, Alexander F. Schier
Cell (2024) Vol. 187, Iss. 14, pp. 3461-3495
Open Access | Times Cited: 10
Degrees of freedom: temperature’s influence on developmental rate
Jess J Bourn, Michael W. Dorrity
Current Opinion in Genetics & Development (2024) Vol. 85, pp. 102155-102155
Open Access | Times Cited: 6
Graph Fourier transform for spatial omics representation and analyses of complex organs
Yuzhou Chang, Jixin Liu, Yi Jiang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 6
Computational methods for alignment and integration of spatially resolved transcriptomics data
Yuyao Liu, Can Yang
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 1094-1105
Open Access | Times Cited: 5
Stereopy: modeling comparative and spatiotemporal cellular heterogeneity via multi-sample spatial transcriptomics
Shuangsang Fang, Mengyang Xu, Lei Cao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 15
INSTINCT: Multi-sample integration of spatial chromatin accessibility sequencing data via stochastic domain translation
Yuyao Liu, Zhen Li, Xiaoyang Chen, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Learning single-cell spatial context through integrated spatial multiomics with CORAL
Siyu He, Matthew F Bieniosek, Dongyuan Song, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Transcriptomics and microbiome insights reveal the protective mechanism of mulberry-derived postbiotics against inflammation in LPS-induced mice
Zaheer Abbas, Yucui Tong, Jing Zhang, et al.
Frontiers in Immunology (2025) Vol. 16
Open Access
Adapting systems biology to address the complexity of human disease in the single-cell era
David S. Fischer, Martin Arreola Villanueva, Peter Winter, et al.
Nature Reviews Genetics (2025)
Closed Access
CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data
Kevin Troulé, Robert Petryszak, Batuhan Çakır, et al.
Nature Protocols (2025)
Open Access
Deep 3D histology powered by tissue clearing, omics and AI
Ali Ertürk
Nature Methods (2024) Vol. 21, Iss. 7, pp. 1153-1165
Closed Access | Times Cited: 3
Modeling causal signal propagation in multi-omic factor space with COSMOS
Aurélien Dugourd, Pascal Lafrenz, Diego Mañanes, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 3
SANTO: a coarse-to-fine alignment and stitching method for spatial omics
Haoyang Li, Yingxin Lin, Wenjia He, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Mapping the topography of spatial gene expression with interpretable deep learning
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
Mapping the Topography of Spatial Gene Expression with Interpretable Deep Learning
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
Lecture notes in computer science (2024), pp. 368-371
Closed Access | Times Cited: 2
Complete spatially resolved gene expression is not necessary for identifying spatial domains
Senlin Lin, Yan Cui, Fangyuan Zhao, et al.
Cell Genomics (2024) Vol. 4, Iss. 6, pp. 100565-100565
Open Access | Times Cited: 2
Longitudinal single-cell data informs deterministic modelling of inflammatory bowel disease
Christoph Kilian, Hanna Ulrich, Viktor A. Zouboulis, et al.
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 2
Global transcription regulation revealed from dynamical correlations in time-resolved single-cell RNA sequencing
Dimitris Volteras, Vahid Shahrezaei, Philipp Thomas
Cell Systems (2024) Vol. 15, Iss. 8, pp. 694-708.e12
Open Access | Times Cited: 2
Tissue histology in 3D

Nature Methods (2024) Vol. 21, Iss. 7, pp. 1133-1133
Closed Access | Times Cited: 1
BioM2: biologically informed multi-stage machine learning for phenotype prediction using omics data
Shunjie Zhang, Li Pan, Shenghan Wang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 1
Metagenomic profiling of rhizosphere microbiota: Unraveling the plant-soil dynamics
Atif Khurshid Wani, Farida Rahayu, Abdullah M. Alkahtani, et al.
Physiological and Molecular Plant Pathology (2024) Vol. 133, pp. 102381-102381
Closed Access | Times Cited: 1
NiCo identifies extrinsic drivers of cell state modulation by niche covariation analysis
Ankit Agrawal, Stefan Thomann, Sukanya Basu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 1
Common lipidomic signatures across distinct acute brain injuries in patient outcome prediction
Santtu Hellström, Antti Sajanti, Abhinav Srinath, et al.
Neurobiology of Disease (2024) Vol. 204, pp. 106762-106762
Open Access | Times Cited: 1
Global transcription regulation revealed from dynamical correlations in time-resolved single-cell RNA-sequencing
Dimitris Volteras, Vahid Shahrezaei, Philipp Thomas
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Graph Fourier transform for spatial omics representation and analyses of complex organs
Yuzhou Chang, Jixin Liu, Yi Jiang, et al.
Research Square (Research Square) (2024)
Open Access
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