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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Nonnegative spatial factorization applied to spatial genomics
F. William Townes, Barbara E. Engelhardt
Nature Methods (2022) Vol. 20, Iss. 2, pp. 229-238
Open Access | Times Cited: 62

Showing 1-25 of 62 citing articles:

Spatial components of molecular tissue biology
Giovanni Palla, David S. Fischer, Aviv Regev, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 3, pp. 308-318
Closed Access | Times Cited: 238
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes
Lukas M. Weber, Arkajyoti Saha, Abhirup Datta, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 60
Principles and challenges of modeling temporal and spatial omics data
Britta Velten, Oliver Stegle
Nature Methods (2023) Vol. 20, Iss. 10, pp. 1462-1474
Closed Access | Times Cited: 43
Spatiotemporal omics for biology and medicine
Longqi Liu, Ao Chen, Yuxiang Li, et al.
Cell (2024) Vol. 187, Iss. 17, pp. 4488-4519
Closed Access | Times Cited: 29
LIANA+ provides an all-in-one framework for cell–cell communication inference
Daniel Dimitrov, Philipp Schäfer, Elias Farr, et al.
Nature Cell Biology (2024) Vol. 26, Iss. 9, pp. 1613-1622
Open Access | Times Cited: 28
Multiscale biochemical mapping of the brain through deep-learning-enhanced high-throughput mass spectrometry
Yuxuan Richard Xie, Daniel C. Castro, Stanislav S. Rubakhin, et al.
Nature Methods (2024) Vol. 21, Iss. 3, pp. 521-530
Open Access | Times Cited: 27
Gene expression networks regulated by human personality
Coral del Val, Elisa Díaz de la Guardia‐Bolívar, Igor Zwir, et al.
Molecular Psychiatry (2024) Vol. 29, Iss. 7, pp. 2241-2260
Open Access | Times Cited: 17
Alignment of spatial genomics data using deep Gaussian processes
Andrew Jones, F. William Townes, Didong Li, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1379-1387
Open Access | Times Cited: 41
Voyager: exploratory single-cell genomics data analysis with geospatial statistics
Lambda Moses, Pétur Helgi Einarsson, Kayla Jackson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 25
LIANA+: an all-in-one cell-cell communication framework
Daniel Dimitrov, Philipp Schäfer, Elias Farr, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 24
Dependency-aware deep generative models for multitasking analysis of spatial omics data
Tian Tian, Jie Zhang, Xiang Lin, et al.
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1501-1513
Closed Access | Times Cited: 10
Mapping the topography of spatial gene expression with interpretable deep learning
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
Nature Methods (2025)
Open Access | Times Cited: 1
Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics
Zhen Li, Xiaoyang Chen, Xuegong Zhang, et al.
Genome Research (2023) Vol. 33, Iss. 10, pp. 1757-1773
Open Access | Times Cited: 22
FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution
Florin C. Walter, Oliver Stegle, Britta Velten
Bioinformatics (2023) Vol. 39, Iss. 5
Open Access | Times Cited: 15
Computational modeling for deciphering tissue microenvironment heterogeneity from spatially resolved transcriptomics
Chuanchao Zhang, Lequn Wang, Qianqian Shi
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2109-2115
Open Access | Times Cited: 4
Charting the tumor microenvironment with spatial profiling technologies
Mattia Toninelli, Grazisa Rossetti, Massimiliano Pagani
Trends in cancer (2023) Vol. 9, Iss. 12, pp. 1085-1096
Open Access | Times Cited: 10
ChromaFactor: Deconvolution of single-molecule chromatin organization with non-negative matrix factorization
Laura M. Gunsalus, Michael J. Keiser, Katherine S. Pollard
PLoS Computational Biology (2025) Vol. 21, Iss. 2, pp. e1012841-e1012841
Open Access
Non-negative matrix factorization reveals seasonal and sex-specific metabolic tactics in tropical tilapia
Min‐Chen Wang, Ching‐Wei Wang, Fumiya Furukawa, et al.
Comparative Biochemistry and Physiology Part D Genomics and Proteomics (2025) Vol. 55, pp. 101448-101448
Closed Access
Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms
Hongyu Zheng, Hirak Sarkar, Benjamin J. Raphael
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Mapping shared and unique features in spatial transcriptomics through multivariate curve resolution
Albert Menéndez-Pedriza, Mercedes Blázquez, Laia Navarro‐Martín, et al.
Microchemical Journal (2025), pp. 113189-113189
Closed Access
Enhancing Scalability in Bayesian Nonparametric Factor Analysis of Spatiotemporal Data
Y.P. Cheng, Cheng Li
Journal of Computational and Graphical Statistics (2025), pp. 1-27
Closed Access
Swarm Intelligence-Based Evolutionary Machine Learning
Jing Liang, Kunjie Yu, Ying Bi, et al.
Elsevier eBooks (2025)
Closed Access
SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data
Mingze Dong, David Su, Harriet M. Kluger, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
CellPie: a scalable spatial transcriptomics factor discovery method via joint non-negative matrix factorization
Sokratia Georgaka, William Geraint Morgans, Qian Zhao, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 6
Open Access
Fluorescence microscopy through scattering media with robust matrix factorization
Zijun Gao, Zhi Ling, W. H. Liu, et al.
Cell Reports Methods (2025), pp. 101031-101031
Open Access
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