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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Improved AlphaFold modeling with implicit experimental information
Thomas C. Terwilliger, Billy K. Poon, Pavel V. Afonine, et al.
Nature Methods (2022) Vol. 19, Iss. 11, pp. 1376-1382
Open Access | Times Cited: 97

Showing 1-25 of 97 citing articles:

AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination
Thomas C. Terwilliger, Dorothée Liebschner, Tristan I. Croll, et al.
Nature Methods (2023) Vol. 21, Iss. 1, pp. 110-116
Open Access | Times Cited: 150
Before and after AlphaFold2: An overview of protein structure prediction
Letícia M. F. Bertoline, Angélica N. Lima, José Eduardo Krieger, et al.
Frontiers in Bioinformatics (2023) Vol. 3
Open Access | Times Cited: 147
Mechanisms and pathology of protein misfolding and aggregation
Nikolaos Louros, Joost Schymkowitz, Frédéric Rousseau
Nature Reviews Molecular Cell Biology (2023) Vol. 24, Iss. 12, pp. 912-933
Closed Access | Times Cited: 103
The power and pitfalls of AlphaFold2 for structure prediction beyond rigid globular proteins
Vinayak Agarwal, Andrew C. McShan
Nature Chemical Biology (2024) Vol. 20, Iss. 8, pp. 950-959
Closed Access | Times Cited: 27
Mechanism of single-stranded DNA annealing by RAD52–RPA complex
Chih-Chao Liang, Luke A. Greenhough, Laura Masino, et al.
Nature (2024) Vol. 629, Iss. 8012, pp. 697-703
Open Access | Times Cited: 20
MoDAFold: a strategy for predicting the structure of missense mutant protein based on AlphaFold2 and molecular dynamics
Lingyan Zheng, Shuiyang Shi, Xiuna Sun, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 19
AI-Based Quality Assessment Methods for Protein structure models from cryo-EM
Zhu Han, Genki Terashi, Farhanaz Farheen, et al.
Current Research in Structural Biology (2025) Vol. 9, pp. 100164-100164
Open Access | Times Cited: 2
Accelerating crystal structure determination with iterative AlphaFold prediction
Thomas C. Terwilliger, Pavel V. Afonine, Dorothée Liebschner, et al.
Acta Crystallographica Section D Structural Biology (2023) Vol. 79, Iss. 3, pp. 234-244
Open Access | Times Cited: 38
Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms
Bin Huang, Lupeng Kong, Chao Wang, et al.
Genomics Proteomics & Bioinformatics (2023) Vol. 21, Iss. 5, pp. 913-925
Open Access | Times Cited: 31
MatGPT: A Vane of Materials Informatics from Past, Present, to Future
Zhilong Wang, An Chen, Kehao Tao, et al.
Advanced Materials (2023) Vol. 36, Iss. 6
Closed Access | Times Cited: 29
Does AlphaFold2 model proteins’ intracellular conformations? An experimental test using cross-linking mass spectrometry of endogenous ciliary proteins
Caitlyn L McCafferty, Erin L. Pennington, Ophelia Papoulas, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 24
The F-box protein UFO controls flower development by redirecting the master transcription factor LEAFY to new cis-elements
Philippe Rieu, Laura Turchi, Emmanuel Thévenon, et al.
Nature Plants (2023) Vol. 9, Iss. 2, pp. 315-329
Open Access | Times Cited: 23
Overview of AlphaFold2 and breakthroughs in overcoming its limitations
Lei Wang, Zehua Wen, Shiwei Liu, et al.
Computers in Biology and Medicine (2024) Vol. 176, pp. 108620-108620
Closed Access | Times Cited: 13
Unmasking AlphaFold to integrate experiments and predictions in multimeric complexes
Claudio Mirabello, Björn Wallner, Björn Nystedt, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 11
AlphaFold two years on: Validation and impact
Oleg Kovalevskiy, Juan Mateos-García, Kathryn Tunyasuvunakool
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 34
Open Access | Times Cited: 10
Structure of an LGR dimer - an evolutionary predecessor of glycoprotein hormone receptors
Zhen Gong, Shuobing Chen, Ziao Fu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
SFCalculator: connecting deep generative models and crystallography
Minhuan Li, Kevin M. Dalton, Doeke R. Hekstra
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
Principles and practical applications of structure-based vaccine design
Patrick O. Byrne, Jason S. McLellan
Current Opinion in Immunology (2022) Vol. 77, pp. 102209-102209
Open Access | Times Cited: 36
Artificial intelligence in small molecule drug discovery from 2018 to 2023: Does it really work?
Qi Lv, Feilong Zhou, Xinhua Liu, et al.
Bioorganic Chemistry (2023) Vol. 141, pp. 106894-106894
Closed Access | Times Cited: 21
Advancing structural biology through breakthroughs in AI
Laksh Aithani, Eric Alcaide, Sergey Bartunov, et al.
Current Opinion in Structural Biology (2023) Vol. 80, pp. 102601-102601
Open Access | Times Cited: 20
Affinity maturation of antibody fragments: A review encompassing the development from random approaches to computational rational optimization
Jiaqi Li, Guangbo Kang, Jiewen Wang, et al.
International Journal of Biological Macromolecules (2023) Vol. 247, pp. 125733-125733
Open Access | Times Cited: 20
A Perspective on the Prospective Use of AI in Protein Structure Prediction
Raphaëlle Versini, Sujith Sritharan, Burcu Aykaç Fas, et al.
Journal of Chemical Information and Modeling (2023) Vol. 64, Iss. 1, pp. 26-41
Open Access | Times Cited: 16
A comprehensive exploration of the druggable conformational space of protein kinases using AI-predicted structures
Noah B. Herrington, Yan Chak Li, David Stein, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 7, pp. e1012302-e1012302
Open Access | Times Cited: 6
AFsample: Improving Multimer Prediction with AlphaFold using Aggressive Sampling
Björn Wallner
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 27
DNA-binding mechanism and evolution of replication protein A
Clément Madru, Markel Martínez‐Carranza, Sébastien Laurent, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 15
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