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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction
Jérôme Tubiana, Dina Schneidman‐Duhovny, Haim J. Wolfson
Nature Methods (2022) Vol. 19, Iss. 6, pp. 730-739
Open Access | Times Cited: 131

Showing 1-25 of 131 citing articles:

Structure-based drug design with geometric deep learning
Clemens Isert, Kenneth Atz, Gisbert Schneider
Current Opinion in Structural Biology (2023) Vol. 79, pp. 102548-102548
Open Access | Times Cited: 96
Hierarchical graph learning for protein–protein interaction
Ziqi Gao, Chenran Jiang, Jiawen Zhang, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 90
PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces
Lucien F. Krapp, Luciano A. Abriata, Fabio Cortés Rodríguez, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 76
Binding Site Detection Remastered: Enabling Fast, Robust, and Reliable Binding Site Detection and Descriptor Calculation with DoGSite3
Joel Graef, Christiane Ehrt, Matthias Rarey
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 10, pp. 3128-3137
Closed Access | Times Cited: 51
A Transformer-Based Ensemble Framework for the Prediction of Protein–Protein Interaction Sites
Minjie Mou, Ziqi Pan, Zhimeng Zhou, et al.
Research (2023) Vol. 6
Open Access | Times Cited: 49
Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
Marc F. Lensink, Guillaume Brysbaert, Nessim Raouraoua, et al.
Proteins Structure Function and Bioinformatics (2023) Vol. 91, Iss. 12, pp. 1658-1683
Open Access | Times Cited: 41
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations
Magnus Haraldson Høie, Frederik Steensgaard Gade, Julie Maria Johansen, et al.
Frontiers in Immunology (2024) Vol. 15
Open Access | Times Cited: 34
Development and use of machine learning algorithms in vaccine target selection
Barbara Bravi
npj Vaccines (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 28
MoDAFold: a strategy for predicting the structure of missense mutant protein based on AlphaFold2 and molecular dynamics
Lingyan Zheng, Shuiyang Shi, Xiuna Sun, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 18
ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a language diffusion model
Bo Ni, David L. Kaplan, Markus J. Buehler
Science Advances (2024) Vol. 10, Iss. 6
Open Access | Times Cited: 16
Leveraging machine learning models for peptide–protein interaction prediction
Yin Song, Xuenan Mi, Diwakar Shukla
RSC Chemical Biology (2024) Vol. 5, Iss. 5, pp. 401-417
Open Access | Times Cited: 15
DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model
Yitian Fang, Yi Jiang, Leyi Wei, et al.
Bioinformatics (2023) Vol. 39, Iss. 12
Open Access | Times Cited: 28
GeoBind: segmentation of nucleic acid binding interface on protein surface with geometric deep learning
Pengpai Li, Zhi–Ping Liu
Nucleic Acids Research (2023) Vol. 51, Iss. 10, pp. e60-e60
Open Access | Times Cited: 23
SaLT&PepPr is an interface-predicting language model for designing peptide-guided protein degraders
Garyk Brixi, Tianzheng Ye, Lauren Hong, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 23
Genome-scale annotation of protein binding sites via language model and geometric deep learning
Qianmu Yuan, Chong Tian, Yuedong Yang
eLife (2024) Vol. 13
Open Access | Times Cited: 10
A comprehensive survey on protein-ligand binding site prediction
Ying Xia, Xiaoyong Pan, Hong‐Bin Shen
Current Opinion in Structural Biology (2024) Vol. 86, pp. 102793-102793
Closed Access | Times Cited: 9
GPSFun: geometry-aware protein sequence function predictions with language models
Qianmu Yuan, Chong Tian, Yidong Song, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. W1, pp. W248-W255
Open Access | Times Cited: 8
Biallelic variants in CSMD1 are implicated in a neurodevelopmental disorder with intellectual disability and variable cortical malformations
Elizabeth A. Werren, Emily Peirent, Henna Jäntti, et al.
Cell Death and Disease (2024) Vol. 15, Iss. 5
Open Access | Times Cited: 8
Pairing interacting protein sequences using masked language modeling
Umberto Lupo, Damiano Sgarbossa, Anne‐Florence Bitbol
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 27
Open Access | Times Cited: 8
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen
В. К. Карнаухов, Dmitrii S. Shcherbinin, Anton O. Chugunov, et al.
Nature Computational Science (2024) Vol. 4, Iss. 7, pp. 510-521
Closed Access | Times Cited: 8
Computational Prediction of Structure, Function, and Interaction of Myzus persicae (Green Peach Aphid) Salivary Effector Proteins
Thomas Waksman, Edmund Astin, S. Ronan Fisher, et al.
Molecular Plant-Microbe Interactions (2024) Vol. 37, Iss. 3, pp. 338-346
Open Access | Times Cited: 7
Computational Chemistry in Structure-Based Solute Carrier Transporter Drug Design: Recent Advances and Future Perspectives
Gao Tu, Tingting Fu, Guoxun Zheng, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 5, pp. 1433-1455
Closed Access | Times Cited: 7
VCP/p97-associated proteins are binders and debranching enzymes of K48–K63-branched ubiquitin chains
Sven M. Lange, Matthew R. McFarland, Frédéric Lamoliatte, et al.
Nature Structural & Molecular Biology (2024)
Open Access | Times Cited: 7
Superimmunity by pan-sarbecovirus nanobodies
Yufei Xiang, Wei Huang, Hejun Liu, et al.
Cell Reports (2022) Vol. 39, Iss. 13, pp. 111004-111004
Open Access | Times Cited: 28
Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model
Yuansong Zeng, Zhuoyi Wei, Qianmu Yuan, et al.
Bioinformatics (2023) Vol. 39, Iss. 4
Open Access | Times Cited: 20
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