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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Squidpy: a scalable framework for spatial omics analysis
Giovanni Palla, Hannah Spitzer, Michal Klein, et al.
Nature Methods (2022) Vol. 19, Iss. 2, pp. 171-178
Open Access | Times Cited: 581

Showing 1-25 of 581 citing articles:

Museum of spatial transcriptomics
Lambda Moses, Lior Pachter
Nature Methods (2022) Vol. 19, Iss. 5, pp. 534-546
Open Access | Times Cited: 691
Methods and applications for single-cell and spatial multi-omics
Katy Vandereyken, Alejandro Sifrim, Bernard Thienpont, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 494-515
Open Access | Times Cited: 580
Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 486
An introduction to spatial transcriptomics for biomedical research
Cameron G. Williams, Hyun Jae Lee, Takahiro Asatsuma, et al.
Genome Medicine (2022) Vol. 14, Iss. 1
Open Access | Times Cited: 453
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Joseph M. Chan, Àlvaro Quintanal-Villalonga, Vianne R. Gao, et al.
Cancer Cell (2021) Vol. 39, Iss. 11, pp. 1479-1496.e18
Open Access | Times Cited: 272
Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging
John W. Hickey, Elizabeth K. Neumann, Andrea J. Radtke, et al.
Nature Methods (2021) Vol. 19, Iss. 3, pp. 284-295
Open Access | Times Cited: 242
The dawn of spatial omics
Dario Bressan, Giorgia Battistoni, Gregory J. Hannon
Science (2023) Vol. 381, Iss. 6657
Open Access | Times Cited: 230
Mapping the developing human immune system across organs
Chenqu Suo, Emma Dann, Issac Goh, et al.
Science (2022) Vol. 376, Iss. 6597
Open Access | Times Cited: 226
Screening cell–cell communication in spatial transcriptomics via collective optimal transport
Zixuan Cang, Yanxiang Zhao, Axel A. Almet, et al.
Nature Methods (2023) Vol. 20, Iss. 2, pp. 218-228
Open Access | Times Cited: 187
Advances in spatial transcriptomic data analysis
Ruben Dries, Jiaji Chen, Natalie Del Rossi, et al.
Genome Research (2021) Vol. 31, Iss. 10, pp. 1706-1718
Open Access | Times Cited: 167
Spatial CRISPR genomics identifies regulators of the tumor microenvironment
Maxime Dhainaut, Samuel A. Rose, Güray Aktürk, et al.
Cell (2022) Vol. 185, Iss. 7, pp. 1223-1239.e20
Open Access | Times Cited: 149
Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues
Duy Pham, Xiao Tan, Brad Balderson, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 142
The scverse project provides a computational ecosystem for single-cell omics data analysis
Isaac Virshup, Danila Bredikhin, Lukas Heumos, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 5, pp. 604-606
Closed Access | Times Cited: 141
DeepST: identifying spatial domains in spatial transcriptomics by deep learning
Chang Xu, Xiyun Jin, Songren Wei, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. 22, pp. e131-e131
Open Access | Times Cited: 130
Statistical and machine learning methods for spatially resolved transcriptomics data analysis
Zexian Zeng, Yawei Li, Yiming Li, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 125
Modeling intercellular communication in tissues using spatial graphs of cells
David S. Fischer, Anna C. Schaar, Fabian J. Theis
Nature Biotechnology (2022) Vol. 41, Iss. 3, pp. 332-336
Open Access | Times Cited: 120
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis
Jana Biermann, Johannes C. Melms, Amit Dipak Amin, et al.
Cell (2022) Vol. 185, Iss. 14, pp. 2591-2608.e30
Open Access | Times Cited: 117
IL-1β+ macrophages fuel pathogenic inflammation in pancreatic cancer
Nicoletta Caronni, Federica La Terza, Francesco Maria Vittoria, et al.
Nature (2023) Vol. 623, Iss. 7986, pp. 415-422
Closed Access | Times Cited: 117
An end-to-end workflow for multiplexed image processing and analysis
Jonas Windhager, Vito Riccardo Tomaso Zanotelli, Daniel Schulz, et al.
Nature Protocols (2023) Vol. 18, Iss. 11, pp. 3565-3613
Open Access | Times Cited: 113
PyDESeq2: a python package for bulk RNA-seq differential expression analysis
Boris Muzellec, Maria Teleńczuk, Vincent Cabeli, et al.
Bioinformatics (2023) Vol. 39, Iss. 9
Open Access | Times Cited: 109
The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location
Ilon Liu, Li Jiang, Erik Samuelsson, et al.
Nature Genetics (2022) Vol. 54, Iss. 12, pp. 1881-1894
Open Access | Times Cited: 101
Spatial atlas of the mouse central nervous system at molecular resolution
Hailing Shi, Yichun He, Yiming Zhou, et al.
Nature (2023) Vol. 622, Iss. 7983, pp. 552-561
Open Access | Times Cited: 100
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
Brenda Pardo, Abby Spangler, Lukas M. Weber, et al.
BMC Genomics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 91
Spatial omics: Navigating to the golden era of cancer research
Yingcheng Wu, Yifei Cheng, Xiangdong Wang, et al.
Clinical and Translational Medicine (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 88
APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge
Sangderk Lee, Nicholas A. Devanney, Lesley R. Golden, et al.
Cell Reports (2023) Vol. 42, Iss. 3, pp. 112196-112196
Open Access | Times Cited: 84
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