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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Orchestrating single-cell analysis with Bioconductor
Robert A. Amezquita, Aaron T. L. Lun, Étienne Becht, et al.
Nature Methods (2019) Vol. 17, Iss. 2, pp. 137-145
Open Access | Times Cited: 697

Showing 1-25 of 697 citing articles:

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
Kristen R. Maynard, Leonardo Collado‐Torres, Lukas M. Weber, et al.
Nature Neuroscience (2021) Vol. 24, Iss. 3, pp. 425-436
Open Access | Times Cited: 710
Spatial transcriptomics at subspot resolution with BayesSpace
Edward Zhao, Matthew R. Stone, Xing Ren, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 11, pp. 1375-1384
Open Access | Times Cited: 583
Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19
Yapeng Su, Daniel Chen, Dan Yuan, et al.
Cell (2020) Vol. 183, Iss. 6, pp. 1479-1495.e20
Open Access | Times Cited: 544
Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 436
Doublet identification in single-cell sequencing data using scDblFinder
Pierre‐Luc Germain, Aaron T. L. Lun, Will Macnair, et al.
F1000Research (2021) Vol. 10, pp. 979-979
Closed Access | Times Cited: 405
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Kun Leng, Emmy Li, Rana Eser, et al.
Nature Neuroscience (2021) Vol. 24, Iss. 2, pp. 276-287
Open Access | Times Cited: 329
Distinct contributions of partial and full EMT to breast cancer malignancy
Fabiana Lüönd, Nami Sugiyama, Ruben Bill, et al.
Developmental Cell (2021) Vol. 56, Iss. 23, pp. 3203-3221.e11
Open Access | Times Cited: 259
A blood atlas of COVID-19 defines hallmarks of disease severity and specificity
David Ahern, Zhichao Ai, Mark Ainsworth, et al.
Cell (2022) Vol. 185, Iss. 5, pp. 916-938.e58
Open Access | Times Cited: 248
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data
Tallulah Andrews, Vladimir Yu Kiselev, Davis J. McCarthy, et al.
Nature Protocols (2020) Vol. 16, Iss. 1, pp. 1-9
Closed Access | Times Cited: 239
A systematic evaluation of single-cell RNA-sequencing imputation methods
Wenpin Hou, Zhicheng Ji, Hongkai Ji, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 233
Astrocytes and oligodendrocytes undergo subtype-specific transcriptional changes in Alzheimer’s disease
Jessica S. Sadick, Michael R. O’Dea, Philip Hasel, et al.
Neuron (2022) Vol. 110, Iss. 11, pp. 1788-1805.e10
Open Access | Times Cited: 228
anndata: Annotated data
Isaac Virshup, Sergei Rybakov, Fabian J. Theis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 226
Spatial components of molecular tissue biology
Giovanni Palla, David S. Fischer, Aviv Regev, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 3, pp. 308-318
Closed Access | Times Cited: 218
Doublet identification in single-cell sequencing data using scDblFinder
Pierre‐Luc Germain, Aaron T. L. Lun, Carlos Garcia Meixide, et al.
F1000Research (2022) Vol. 10, pp. 979-979
Open Access | Times Cited: 218
FunRich enables enrichment analysis of OMICs datasets
Pamali Fonseka, Mohashin Pathan, Sai V. Chitti, et al.
Journal of Molecular Biology (2020) Vol. 433, Iss. 11, pp. 166747-166747
Closed Access | Times Cited: 216
A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants
Rachel Shahan, Che‐Wei Hsu, Trevor M. Nolan, et al.
Developmental Cell (2022) Vol. 57, Iss. 4, pp. 543-560.e9
Open Access | Times Cited: 215
Transcriptional signature in microglia associated with Aβ plaque phagocytosis
Alexandra Grubman, Xin Yi Choo, Gabriel Chew, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 204
GABA-receptive microglia selectively sculpt developing inhibitory circuits
Emilia Favuzzi, Shuhan Huang, Giuseppe-Antonio Saldi, et al.
Cell (2021) Vol. 184, Iss. 15, pp. 4048-4063.e32
Open Access | Times Cited: 204
ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis
Johannes Griss, Guilherme Viteri, Konstantinos Sidiropoulos, et al.
Molecular & Cellular Proteomics (2020) Vol. 19, Iss. 12, pp. 2115-2125
Open Access | Times Cited: 202
Single-cell analysis of the cellular heterogeneity and interactions in the injured mouse spinal cord
Lindsay M. Milich, James S. Choi, Christine B. Ryan, et al.
The Journal of Experimental Medicine (2021) Vol. 218, Iss. 8
Open Access | Times Cited: 179
Microglia and Astrocytes in Disease: Dynamic Duo or Partners in Crime?
Shane A. Liddelow, Samuel E. Marsh, Beth Stevens
Trends in Immunology (2020) Vol. 41, Iss. 9, pp. 820-835
Closed Access | Times Cited: 178
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Matthew N. Tran, Kristen R. Maynard, Abby Spangler, et al.
Neuron (2021) Vol. 109, Iss. 19, pp. 3088-3103.e5
Open Access | Times Cited: 171
Advances in spatial transcriptomic data analysis
Ruben Dries, Jiaji Chen, Natalie Del Rossi, et al.
Genome Research (2021) Vol. 31, Iss. 10, pp. 1706-1718
Open Access | Times Cited: 161
Neurocognitive and hypokinetic movement disorder with features of parkinsonism after BCMA-targeting CAR-T cell therapy
Oliver Van Oekelen, Adolfo Aleman, Bhaskar Upadhyaya, et al.
Nature Medicine (2021) Vol. 27, Iss. 12, pp. 2099-2103
Open Access | Times Cited: 161
Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy
Tobias Hoch, Daniel Schulz, Nils Eling, et al.
Science Immunology (2022) Vol. 7, Iss. 70
Open Access | Times Cited: 159
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