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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis
Vipul Singhal, Nigel Chou, Joseph Lee, et al.
Nature Genetics (2024) Vol. 56, Iss. 3, pp. 431-441
Open Access | Times Cited: 45

Showing 1-25 of 45 citing articles:

Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Gunsagar S. Gulati, Jeremy Philip D’Silva, Yunhe Liu, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 26, Iss. 1, pp. 11-31
Closed Access | Times Cited: 14
Multi-slice spatial transcriptome domain analysis with SpaDo
Bin Duan, Shaoqi Chen, Xiaojie Cheng, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 7
Guidestar: a spike-in approach to improve RNA detection accuracy in imaging-based spatial transcriptomics
Jazlynn Xiu Min Tan, Lingling Wang, Wan Yi Seow, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Evaluation of the microenvironment formed by interferon-β
Mai Yamagishi, Yutaka Hori, Nobutake Suzuki, et al.
Frontiers in Chemical Biology (2025) Vol. 3
Open Access
Towards deciphering the bone marrow microenvironment with spatial multi-omics
Raymond K. H. Yip, Edwin D. Hawkins, Bowden Rory, et al.
Seminars in Cell and Developmental Biology (2025) Vol. 167, pp. 10-21
Closed Access
Spatial Dynamics of the Developing Human Heart
Enikő Lázár, Raphaël Mauron, Žaneta Andrusivová, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Protocol for high-plex, whole-slide imaging of human formalin-fixed paraffin-embedded tissue using PhenoCycler-Fusion
Meg L. Donovan, Niyati Jhaveri, Ning Ma, et al.
STAR Protocols (2024) Vol. 5, Iss. 3, pp. 103226-103226
Open Access | Times Cited: 4
Benchmarking clustering, alignment, and integration methods for spatial transcriptomics
Yunfei Hu, Manfei Xie, Yikang Li, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Clustering the cortical laminae: in vivo parcellation
Ittai Shamir, Yaniv Assaf, Ron Shamir
Brain Structure and Function (2024) Vol. 229, Iss. 2, pp. 443-458
Open Access | Times Cited: 3
MNMST: topology of cell networks leverages identification of spatial domains from spatial transcriptomics data
Yu Wang, Zaiyi Liu, Xiaoke Ma
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 3
Towards a universal spatial molecular atlas of the mouse brain
Yichun He, Hao Sheng, Hailing Shi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
A comprehensive survey of dimensionality reduction and clustering methods for single-cell and spatial transcriptomics data
Yidi Sun, Lingling Kong, Jiayi Huang, et al.
Briefings in Functional Genomics (2024) Vol. 23, Iss. 6, pp. 733-744
Closed Access | Times Cited: 3
The transcriptomic and spatial organization of telencephalic GABAergic neuronal types
Cindy T. J. van Velthoven, Yuan Gao, Michael Kunst, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis
Wen Wang, Shiwei Zheng, Sujung Crystal Shin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
BANKSY: scalable cell typing and domain segmentation for spatial omics
Vipul Singhal, Nigel Chou
Nature Reviews Genetics (2024) Vol. 25, Iss. 8, pp. 527-528
Closed Access | Times Cited: 2
Points2Regions: Fast, interactive clustering of imaging‐based spatial transcriptomics data
Axel Andersson, Andrea Beháňová, Christophe Avenel, et al.
Cytometry Part A (2024) Vol. 105, Iss. 9, pp. 677-687
Open Access | Times Cited: 2
ST-SCSR: identifying spatial domains in spatial transcriptomics data via structure correlation and self-representation
Min Zhang, Wensheng Zhang, Xiaoke Ma
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 2
metsDB: a knowledgebase of cancer metastasis at bulk, single-cell and spatial levels
Sijia Wu, Jiajin Zhang, Yanfei Wang, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D1427-D1434
Open Access | Times Cited: 1
Shared and unique transcriptomic signatures of antidepressant and probiotics action in the mammalian brain
Nirmala Arul Rayan, Jonathan Aow, Michelle Gek Liang Lim, et al.
Molecular Psychiatry (2024)
Closed Access | Times Cited: 1
StaVia: spatially and temporally aware cartography with higher-order random walks for cell atlases
Shobana V. Stassen, Minato Kobashi, Edmund Y. Lam, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 1
StereoSiTE: a framework to spatially and quantitatively profile the cellular neighborhood organized iTME
Xing Liu, Chi Qu, Chuandong Liu, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 1
Quantitative assessment of single-cell RNA-seq clustering with CONCORDEX
Kayla Jackson, A. Sina Booeshaghi, Ángel Gálvez-Merchán, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Cellular neighborhood analysis in spatial omics reveals new tissue domains and cell subtypes
Marc J. Ruitenberg, Quan Nguyen
Nature Genetics (2024) Vol. 56, Iss. 3, pp. 362-364
Closed Access
SPARROW reveals cell states and functions influenced by microenvironment zones in complex tissues
Peiyao A. Zhao, Jessica Garber, Claire E. Gustafson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Single-cell and spatial atlas of steatotic liver disease-related hepatocellular carcinoma
Aldo Prawira, Hang Xu, Wei Qiang Leow, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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