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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
Jeffrey M. Granja, M. Ryan Corces, Sarah E. Pierce, et al.
Nature Genetics (2021) Vol. 53, Iss. 3, pp. 403-411
Open Access | Times Cited: 907

Showing 1-25 of 907 citing articles:

Single-cell chromatin state analysis with Signac
Tim Stuart, Avi Srivastava, Shaista Madad, et al.
Nature Methods (2021) Vol. 18, Iss. 11, pp. 1333-1341
Open Access | Times Cited: 976
Benchmarking atlas-level data integration in single-cell genomics
Malte D. Luecken, Maren Büttner, Kridsadakorn Chaichoompu, et al.
Nature Methods (2021) Vol. 19, Iss. 1, pp. 41-50
Open Access | Times Cited: 727
Methods and applications for single-cell and spatial multi-omics
Katy Vandereyken, Alejandro Sifrim, Bernard Thienpont, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 494-515
Open Access | Times Cited: 525
Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 436
Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer’s disease
Samuel Morabito, Emily Miyoshi, Neethu Michael, et al.
Nature Genetics (2021) Vol. 53, Iss. 8, pp. 1143-1155
Open Access | Times Cited: 417
Doublet identification in single-cell sequencing data using scDblFinder
Pierre‐Luc Germain, Aaron T. L. Lun, Will Macnair, et al.
F1000Research (2021) Vol. 10, pp. 979-979
Closed Access | Times Cited: 405
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells
Eleni P. Mimitou, Caleb A. Lareau, Kelvin Y. Chen, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 10, pp. 1246-1258
Open Access | Times Cited: 349
Spatial multi-omic map of human myocardial infarction
Christoph Kuppe, Ricardo O. Ramirez Flores, Zhijian Li, et al.
Nature (2022) Vol. 608, Iss. 7924, pp. 766-777
Open Access | Times Cited: 333
Wound healing, fibroblast heterogeneity, and fibrosis
Heather E. Talbott, Shamik Mascharak, Michelle Griffin, et al.
Cell stem cell (2022) Vol. 29, Iss. 8, pp. 1161-1180
Open Access | Times Cited: 301
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
M. Ryan Corces, Anna Shcherbina, Soumya Kundu, et al.
Nature Genetics (2020) Vol. 52, Iss. 11, pp. 1158-1168
Open Access | Times Cited: 283
A blood atlas of COVID-19 defines hallmarks of disease severity and specificity
David Ahern, Zhichao Ai, Mark Ainsworth, et al.
Cell (2022) Vol. 185, Iss. 5, pp. 916-938.e58
Open Access | Times Cited: 248
Chromatin accessibility profiling by ATAC-seq
Fiorella C. Grandi, Hailey Modi, Lucas Kampman, et al.
Nature Protocols (2022) Vol. 17, Iss. 6, pp. 1518-1552
Open Access | Times Cited: 238
SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
Carmen Bravo González‐Blas, Seppe De Winter, Gert Hulselmans, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1355-1367
Open Access | Times Cited: 232
Chemical reprogramming of human somatic cells to pluripotent stem cells
Jingyang Guan, Guan Wang, Jinlin Wang, et al.
Nature (2022) Vol. 605, Iss. 7909, pp. 325-331
Closed Access | Times Cited: 231
hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
Samuel Morabito, Fairlie Reese, Negin Rahimzadeh, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 6, pp. 100498-100498
Open Access | Times Cited: 222
Doublet identification in single-cell sequencing data using scDblFinder
Pierre‐Luc Germain, Aaron T. L. Lun, Carlos Garcia Meixide, et al.
F1000Research (2022) Vol. 10, pp. 979-979
Open Access | Times Cited: 218
Spatial-CUT&Tag: Spatially resolved chromatin modification profiling at the cellular level
Yanxiang Deng, Marek Bartošovič, Petra Kukanja, et al.
Science (2022) Vol. 375, Iss. 6581, pp. 681-686
Open Access | Times Cited: 211
Spatial profiling of chromatin accessibility in mouse and human tissues
Yanxiang Deng, Marek Bartošovič, Sai Ma, et al.
Nature (2022) Vol. 609, Iss. 7926, pp. 375-383
Open Access | Times Cited: 206
ecDNA hubs drive cooperative intermolecular oncogene expression
King L. Hung, Kathryn E. Yost, Liangqi Xie, et al.
Nature (2021) Vol. 600, Iss. 7890, pp. 731-736
Open Access | Times Cited: 192
Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq
Elliott Swanson, Cara Lord, Julian Reading, et al.
eLife (2021) Vol. 10
Open Access | Times Cited: 188
Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19
Aaron J. Wilk, Madeline Lee, Bei Wei, et al.
The Journal of Experimental Medicine (2021) Vol. 218, Iss. 8
Open Access | Times Cited: 181
Spatial epigenome–transcriptome co-profiling of mammalian tissues
Di Zhang, Yanxiang Deng, Petra Kukanja, et al.
Nature (2023) Vol. 616, Iss. 7955, pp. 113-122
Open Access | Times Cited: 174
Maladaptive innate immune training of myelopoiesis links inflammatory comorbidities
Xiaofei Li, Hui Wang, Xiang Yu, et al.
Cell (2022) Vol. 185, Iss. 10, pp. 1709-1727.e18
Open Access | Times Cited: 170
Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer
Winston R. Becker, Stephanie Nevins, Derek C. Chen, et al.
Nature Genetics (2022) Vol. 54, Iss. 7, pp. 985-995
Open Access | Times Cited: 167
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression
Steven J. Wu, Scott N. Furlan, Anca B. Mihalas, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 7, pp. 819-824
Open Access | Times Cited: 158
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