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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

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Showing 22 citing articles:

Interpretable AI for inference of causal molecular relationships from omics data
Payam Dibaeinia, Abhishek Ojha, Saurabh Sinha
Science Advances (2025) Vol. 11, Iss. 7
Open Access | Times Cited: 1
Building and analyzing metacells in single-cell genomics data
Mariia Bilous, Léonard Hérault, Aurélie AG Gabriel, et al.
Molecular Systems Biology (2024) Vol. 20, Iss. 7, pp. 744-766
Open Access | Times Cited: 4
Determining interaction directionality in complex biochemical networks from stationary measurements
N. Leibovich
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
A mechanism-informed deep neural network enables prioritization of regulators that drive cell state transitions
Xi Xi, Jiaqi Li, Jinmeng Jia, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Capturing cell-type-specific activities of cis-regulatory elements from peak-based single-cell ATAC-seq
Mengjie Chen
Cell Genomics (2025), pp. 100806-100806
Open Access
Inferring gene regulatory networks from time-series scRNA-seq data via GRANGER causal recurrent autoencoders
Liang Chen, Madison Dautle, Shuang Gao, et al.
Briefings in Bioinformatics (2025) Vol. 26, Iss. 2
Open Access
Data Assimilation for Sign-indefinite Priors: A generalization of Sinkhorn’s algorithm
Anqi Dong, Tryphon T. Georgiou, Allen Tannenbaum
Automatica (2025) Vol. 177, pp. 112283-112283
Closed Access
New horizons at the interface of artificial intelligence and translational cancer research
Josephine Yates, Eliezer M. Van Allen
Cancer Cell (2025) Vol. 43, Iss. 4, pp. 708-727
Closed Access
Recent advances in exploring transcriptional regulatory landscape of crops
Qiang Huo, Rentao Song, Zeyang Ma
Frontiers in Plant Science (2024) Vol. 15
Open Access | Times Cited: 3
A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data
Jens Uwe Loers, Vanessa Vermeirssen
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 3
Single-cell and spatial multiomic inference of gene regulatory networks using SCRIPro
Zhanhe Chang, Yunfan Xu, Xin Dong, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access | Times Cited: 2
LogicGep: Boolean networks inference using symbolic regression from time-series transcriptomic profiling data
Dezhen Zhang, Shuhua Gao, Zhi‐Ping Liu, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 1
Integrated Single-Cell Multiomic Profiling of Caudate Nucleus Suggests Key Mechanisms in Alcohol Use Disorder
Nicholas Green, Hongyu Gao, Xiaona Chu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Reverse network diffusion to remove indirect noise for better inference of gene regulatory networks
Jiating Yu, Jiacheng Leng, Yuan Fan, et al.
Bioinformatics (2024) Vol. 40, Iss. 7
Open Access
Computing hematopoietic stem and progenitor cell plasticity in response to genetic mutations and environmental stimulations
Yuchen Wen, Hang He, Yunxi Ma, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Cell-type-specific mapping of enhancers and target genes from single-cell multimodal data
Chang Su, Dongsoo Lee, Peng Jin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Combinatorial transcription factor binding encodes cis-regulatory wiring of mouse forebrain GABAergic neurogenesis
Rinaldo Catta-Preta, Susan Lindtner, Athéna R. Ypsilanti, et al.
Developmental Cell (2024)
Open Access
Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods
Karamveer Karamveer, Yasin Uzun
Bioinformatics and Biology Insights (2024) Vol. 18
Open Access
Transfer learning and DNA language models enhance transcription factor binding predictions
Ekin Deniz Aksu, Martin Vingron
(2024)
Open Access
Computing hematopoiesis plasticity in response to genetic mutations and environmental stimulations
Yuchen Wen, Hang He, Yunxi Ma, et al.
Life Science Alliance (2024) Vol. 8, Iss. 2, pp. e202402971-e202402971
Open Access
All the single cells: Single‐cell transcriptomics/epigenomics experimental design and analysis considerations for glial biologists
Katherine E. Prater, Kevin Lin
Glia (2024) Vol. 73, Iss. 3, pp. 451-473
Open Access
RegVelo: gene-regulatory-informed dynamics of single cells
W. Wang, Zhiyuan Hu, Philipp Weiler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Developmental rewiring of the NGAL/CUC/KLU network associated with pleiotropic roles of NGAL genes
Antoine Nicolas, Panagiotis Papadopoulos, Mattéo Caroulle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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