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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Spatial host–microbiome sequencing reveals niches in the mouse gut
Britta Lötstedt, Martin Stražar, Ramnik J. Xavier, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 9, pp. 1394-1403
Open Access | Times Cited: 43

Showing 1-25 of 43 citing articles:

Spatial omics technologies at multimodal and single cell/subcellular level
Jiwoon Park, Junbum Kim, Tyler Lewy, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 70
Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system
Philipp Schäfer, Daniel Dimitrov, Eduardo J. Villablanca, et al.
Nature Immunology (2024) Vol. 25, Iss. 3, pp. 405-417
Closed Access | Times Cited: 12
LIANA+ provides an all-in-one framework for cell–cell communication inference
Daniel Dimitrov, Philipp Schäfer, Elias Farr, et al.
Nature Cell Biology (2024) Vol. 26, Iss. 9, pp. 1613-1622
Open Access | Times Cited: 12
Spatial transcriptomics in development and disease
Ran Zhou, Gaoxia Yang, Yan Zhang, et al.
Molecular Biomedicine (2023) Vol. 4, Iss. 1
Open Access | Times Cited: 21
Gut virome in inflammatory bowel disease and beyond
Hein M. Tun, Ye Peng, Luca Massimino, et al.
Gut (2023) Vol. 73, Iss. 2, pp. 350-360
Open Access | Times Cited: 20
Spatial mapping of mobile genetic elements and their bacterial hosts in complex microbiomes
Benjamin Grodner, Hao Shi, Owen Farchione, et al.
Nature Microbiology (2024) Vol. 9, Iss. 9, pp. 2262-2277
Open Access | Times Cited: 6
A multi-omics spatial framework for host-microbiome dissection within the intestinal tissue microenvironment
Bokai Zhu, Yunhao Bai, Yao Yu Yeo, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
SAMPL-seq reveals micron-scale spatial hubs in the human gut microbiome
Miles Richardson, Shijie Zhao, Liyuan Lin, et al.
Nature Microbiology (2025) Vol. 10, Iss. 2, pp. 527-540
Open Access
Enablers and challenges of spatial omics, a melting pot of technologies
Theodore Alexandrov, Julio Sáez-Rodríguez, Sinem K. Saka
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 15
Emerging tools for uncovering genetic and transcriptomic heterogeneities in bacteria
Yi Liao
Biophysical Reviews (2024) Vol. 16, Iss. 1, pp. 109-124
Closed Access | Times Cited: 4
Community standards and future opportunities for synthetic communities in plant–microbiota research
Trent R. Northen, Manuel Kleiner, Marta Torres, et al.
Nature Microbiology (2024) Vol. 9, Iss. 11, pp. 2774-2784
Closed Access | Times Cited: 4
Epithelial regulation of microbiota-immune cell dynamics
Bailey J. Didriksen, Emily M. Eshleman, Theresa Alenghat
Mucosal Immunology (2024) Vol. 17, Iss. 2, pp. 303-313
Open Access | Times Cited: 3
Next-Generation Sequencing-Based Spatial Transcriptomics: A Perspective from Barcoding Chemistry
Weixiong Shi, Jing Zhang, Shanqing Huang, et al.
JACS Au (2024) Vol. 4, Iss. 5, pp. 1723-1743
Open Access | Times Cited: 3
Navigating beyond associations: Opportunities to establish causal relationships between the gut microbiome and colorectal carcinogenesis
Floor S Baas, Nele Brusselaers, Irıs D. Nagtegaal, et al.
Cell Host & Microbe (2024) Vol. 32, Iss. 8, pp. 1235-1247
Closed Access | Times Cited: 3
A Spatial Multi-Modal Dissection of Host-Microbiome Interactions within the Colitis Tissue Microenvironment
Bokai Zhu, Yunhao Bai, Yao Yu Yeo, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Keystone pathobionts associated with colorectal cancer promote oncogenic reprograming
Joshua P. Jones, Qiaojuan Shi, Rahul R. Nath, et al.
PLoS ONE (2024) Vol. 19, Iss. 2, pp. e0297897-e0297897
Open Access | Times Cited: 1
Symbiotic symphony: Understanding host-microbiota dialogues in a spatial context
Soumi Chatterjee, Steven T. Leach, Kei Lui, et al.
Seminars in Cell and Developmental Biology (2024) Vol. 161-162, pp. 22-30
Closed Access | Times Cited: 1
Enhancing the bioavailability and activity of natural antioxidants with nanobubbles and nanoparticles
Miroslav Čolić, Sandra Kraljević Pavelić, Željka Peršurić, et al.
Redox Report (2024) Vol. 29, Iss. 1
Open Access | Times Cited: 1
Statistical and computational methods for integrating microbiome, host genomics, and metabolomics data
Rebecca A. Deek, Siyuan Ma, James M. Lewis, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 1
Spatial methods for microbiome–host interactions
Ioannis Ntekas, Iwijn De Vlaminck
Nature Biotechnology (2023) Vol. 42, Iss. 9, pp. 1359-1360
Closed Access | Times Cited: 3
深度学习在生物医学领域中的应用简介
Ruisong WANG, Shengnan WANG, Tieliu SHI
Scientia Sinica Vitae (2024)
Closed Access
Oral microbiota and gastric cancer: recent highlights and knowledge gaps
Ruihong Xia, Zhengchen Jiang, Ying Zhou, et al.
Journal of Oral Microbiology (2024) Vol. 16, Iss. 1
Open Access
An approach to analyze spatiotemporal patterns of gene expression at single-cell resolution in Candida albicans -infected mouse tongues
Elena Lindemann‐Perez, Diana L. Rodríguez, J. Christian Pérez
mSphere (2024) Vol. 9, Iss. 9
Open Access
Environmental community transcriptomics: strategies and struggles
Jeanet Mante, Kyra E. Groover, Randi M. Pullen
Briefings in Functional Genomics (2024)
Open Access
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