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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Comparative analysis of cell–cell communication at single-cell resolution
Aaron J. Wilk, Alex K. Shalek, Susan Holmes, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 3, pp. 470-483
Open Access | Times Cited: 59

Showing 1-25 of 59 citing articles:

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
Robin Browaeys, Jeroen Gilis, Chananchida Sang-aram, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 66
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 57
The diversification of methods for studying cell–cell interactions and communication
Erick Armingol, Hratch Baghdassarian, Nathan E. Lewis
Nature Reviews Genetics (2024) Vol. 25, Iss. 6, pp. 381-400
Closed Access | Times Cited: 51
Cell–cell communication: new insights and clinical implications
Jimeng Su, Ying Song, Zhipeng Zhu, et al.
Signal Transduction and Targeted Therapy (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 31
Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system
Philipp Schäfer, Daniel Dimitrov, Eduardo J. Villablanca, et al.
Nature Immunology (2024) Vol. 25, Iss. 3, pp. 405-417
Closed Access | Times Cited: 18
Single-cell RNA-seq methods to interrogate virus-host interactions
Kalani Ratnasiri, Aaron J. Wilk, Madeline Lee, et al.
Seminars in Immunopathology (2022) Vol. 45, Iss. 1, pp. 71-89
Open Access | Times Cited: 38
LIANA+: an all-in-one cell-cell communication framework
Daniel Dimitrov, Philipp Schäfer, Elias Farr, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 24
Unraveling the intercellular communication disruption and key pathways in Alzheimer’s disease: an integrative study of single-nucleus transcriptomes and genetic association
Andi Liu, Brisa S. Fernandes, Citu Citu, et al.
Alzheimer s Research & Therapy (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 14
Identifying potential ligand–receptor interactions based on gradient boosted neural network and interpretable boosting machine for intercellular communication analysis
Lihong Peng, Pengfei Gao, Wei Xiong, et al.
Computers in Biology and Medicine (2024) Vol. 171, pp. 108110-108110
Closed Access | Times Cited: 11
Single-cell omics: experimental workflow, data analyses and applications
Fengying Sun, Haoyan Li, Dongqing Sun, et al.
Science China Life Sciences (2024)
Closed Access | Times Cited: 10
Deciphering cell–cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network
Wenyi Yang, Pingping Wang, Shouping Xu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 10
Engineering CAR‐T Therapeutics for Enhanced Solid Tumor Targeting
Danqing Zhu, Wonjoon Kim, Hyunjin Lee, et al.
Advanced Materials (2025)
Closed Access | Times Cited: 1
snRNA‐Seq and Spatial Transcriptome Reveal Cell–Cell Crosstalk Mediated Metabolic Regulation in Porcine Skeletal Muscle
Liu Guo, Mengmeng Han, Jianzhong Xu, et al.
Journal of Cachexia Sarcopenia and Muscle (2025) Vol. 16, Iss. 2
Open Access | Times Cited: 1
ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods
Jiaxin Luo, Minghua Deng, Xuegong Zhang, et al.
Genome Research (2023) Vol. 33, Iss. 10, pp. 1788-1805
Open Access | Times Cited: 16
Bioengineered Hydrogels Recapitulate Fibroblast Heterogeneity in Cancer
Nicholas Ching Wei Ho, Josephine Yu Yan Yap, Zixuan Zhao, et al.
Advanced Science (2024) Vol. 11, Iss. 20
Open Access | Times Cited: 6
Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single‐cell RNA sequencing analyses
Jorge A. Tzec‐Interián, Daianna González‐Padilla, Elsa Góngora‐Castillo
Quantitative Biology (2025) Vol. 13, Iss. 2
Open Access
Improving Spatial Transcriptomics with Membrane‐Based Boundary Definition and Enhanced Single‐Cell Resolution
Song Li, Liqun Wang, Zitian He, et al.
Small Methods (2025)
Open Access
Cell signaling pathways discovery from multi-modal data
Changhan He, Claire Simpson, Ian Cossentino, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Adapting systems biology to address the complexity of human disease in the single-cell era
David S. Fischer, Martin Arreola Villanueva, Peter Winter, et al.
Nature Reviews Genetics (2025)
Closed Access
Engineered Proteins and Chemical Tools to Probe the Cell Surface Proteome
Kevin K. Leung, Kaitlin Schaefer, Zhi Lin, et al.
Chemical Reviews (2025)
Open Access
Deciphering the heterogeneity and immunosuppressive function of regulatory T cells in osteosarcoma using single-cell RNA transcriptome
Debin Cheng, Zhao Zhang, Zhenzhou Mi, et al.
Computers in Biology and Medicine (2023) Vol. 165, pp. 107417-107417
Open Access | Times Cited: 11
Dimension reduction, cell clustering, and cell–cell communication inference for single-cell transcriptomics with DcjComm
Qian Ding, Wenyi Yang, Guangfu Xue, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Histone Lysine Crotonylation Regulates Long-Term Memory Storage
Utsav Mukherjee, Budhaditya Basu, Stacy E. Beyer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Unraveling cell–cell communication with NicheNet by inferring active ligands from transcriptomics data
Chananchida Sang-aram, Robin Browaeys, Ruth Seurinck, et al.
Nature Protocols (2025)
Open Access
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