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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Dictionary learning for integrative, multimodal and scalable single-cell analysis
Yuhan Hao, Tim Stuart, Madeline H. Kowalski, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 2, pp. 293-304
Open Access | Times Cited: 1031

Showing 1-25 of 1031 citing articles:

Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 436
Network pharmacology: towards the artificial intelligence-based precision traditional Chinese medicine
Peng Zhang, Dingfan Zhang, Wuai Zhou, et al.
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 108
Infiltrating CD8+ T cells exacerbate Alzheimer’s disease pathology in a 3D human neuroimmune axis model
Mehdi Jorfi, Joseph Park, Clare K. Hall, et al.
Nature Neuroscience (2023) Vol. 26, Iss. 9, pp. 1489-1504
Open Access | Times Cited: 80
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
Jorge Álvarez-Jarreta, B Kirtley Amos, Cristina Aurrecoechea, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D808-D816
Open Access | Times Cited: 71
edgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets
Yunshun Chen, Lizhong Chen, Aaron T. L. Lun, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 47
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 45
Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy
Stefanie Bärthel, Chiara Falcomatà, Roland Rad, et al.
Nature Cancer (2023) Vol. 4, Iss. 4, pp. 454-467
Open Access | Times Cited: 43
Mapping the cellular biogeography of human bone marrow niches using single-cell transcriptomics and proteomic imaging
Shovik Bandyopadhyay, Michael P. Duffy, Kyung Jin Ahn, et al.
Cell (2024) Vol. 187, Iss. 12, pp. 3120-3140.e29
Open Access | Times Cited: 39
A Comparative Analysis of Imaging-Based Spatial Transcriptomics Platforms
David P. Cook, Kirk B. Jensen, Kellie Wise, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 36
Cancer SLC6A6-mediated taurine uptake transactivates immune checkpoint genes and induces exhaustion in CD8+ T cells
Tianyu Cao, Wenyao Zhang, Qi Wang, et al.
Cell (2024) Vol. 187, Iss. 9, pp. 2288-2304.e27
Closed Access | Times Cited: 34
Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling
Michelli F. Oliveira, Juan P. Romero, Meii Chung, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 31
Transplantation of chemically induced pluripotent stem-cell-derived islets under abdominal anterior rectus sheath in a type 1 diabetes patient
Shusen Wang, Yuanyuan Du, Boya Zhang, et al.
Cell (2024) Vol. 187, Iss. 22, pp. 6152-6164.e18
Closed Access | Times Cited: 28
Modeling blood-brain barrier formation and cerebral cavernous malformations in human PSC-derived organoids
Lan T.M. Dao, Zhen You, Lu Lu, et al.
Cell stem cell (2024) Vol. 31, Iss. 6, pp. 818-833.e11
Closed Access | Times Cited: 22
Multiplex protein imaging in tumour biology
Natalie de Souza, Shan Zhao, Bernd Bodenmiller
Nature reviews. Cancer (2024) Vol. 24, Iss. 3, pp. 171-191
Closed Access | Times Cited: 17
The future of rapid and automated single-cell data analysis using reference mapping
Mohammad Lotfollahi, Yuhan Hao, Fabian J. Theis, et al.
Cell (2024) Vol. 187, Iss. 10, pp. 2343-2358
Open Access | Times Cited: 17
LAG-3 sustains TOX expression and regulates the CD94/NKG2-Qa-1b axis to govern exhausted CD8 T cell NK receptor expression and cytotoxicity
Shin Foong Ngiow, Sasikanth Manne, Yinghui Huang, et al.
Cell (2024) Vol. 187, Iss. 16, pp. 4336-4354.e19
Closed Access | Times Cited: 16
Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Gunsagar S. Gulati, Jeremy Philip D’Silva, Yunhe Liu, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 26, Iss. 1, pp. 11-31
Closed Access | Times Cited: 16
Gut microbiota-driven metabolic alterations reveal gut–brain communication in Alzheimer’s disease model mice
Yijing Chen, Yinhu Li, Yingying Fan, et al.
Gut Microbes (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 15
Primitive macrophages enable long-term vascularization of human heart-on-a-chip platforms
Shira Landau, Yimu Zhao, Homaira Hamidzada, et al.
Cell stem cell (2024) Vol. 31, Iss. 8, pp. 1222-1238.e10
Closed Access | Times Cited: 15
CZ CELLxGENE Discover: a single-cell data platform for scalable exploration, analysis and modeling of aggregated data
Shibla Abdulla, Brian D. Aevermann, Pedro Assis, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D886-D900
Open Access | Times Cited: 15
Molecular and cellular dynamics of the developing human neocortex at single-cell resolution
Li Wang, Cheng Wang, Juan Moriano, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 13
ITPRIPL1 binds CD3ε to impede T cell activation and enable tumor immune evasion
Shouyan Deng, Yibo Zhang, Huanbin Wang, et al.
Cell (2024) Vol. 187, Iss. 9, pp. 2305-2323.e33
Closed Access | Times Cited: 13
High resolution spatial profiling of kidney injury and repair using RNA hybridization-based in situ sequencing
Hao Wu, Eryn E. Dixon, Qiao Xuanyuan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 12
Nerve growth factor receptor limits inflammation to promote remodeling and repair of osteoarthritic joints
Lan Zhao, Yumei Lai, Hongli Jiao, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 12
FBP1 controls liver cancer evolution from senescent MASH hepatocytes
Li Gu, Yahui Zhu, Shuvro P. Nandi, et al.
Nature (2025) Vol. 637, Iss. 8045, pp. 461-469
Closed Access | Times Cited: 2
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