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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics
Simon Mages, Noa Moriel, Inbal Avraham‐Davidi, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 10, pp. 1465-1473
Open Access | Times Cited: 36

Showing 1-25 of 36 citing articles:

Emergence of division of labor in tissues through cell interactions and spatial cues
Miri Adler, Noa Moriel, Aleksandrina Goeva, et al.
Cell Reports (2023) Vol. 42, Iss. 5, pp. 112412-112412
Open Access | Times Cited: 28
High resolution spatial profiling of kidney injury and repair using RNA hybridization-based in situ sequencing
Hao Wu, Eryn E. Dixon, Qiao Xuanyuan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity
Anand G. Patel, Orr Ashenberg, Natalie B. Collins, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
Graph Fourier transform for spatial omics representation and analyses of complex organs
Yuzhou Chang, Jixin Liu, Yi Jiang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 7
Plasmodium infection induces phenotypic, clonal, and spatial diversity among differentiating CD4+ T cells
Cameron G. Williams, Marcela L. Moreira, Takahiro Asatsuma, et al.
Cell Reports (2024) Vol. 43, Iss. 6, pp. 114317-114317
Open Access | Times Cited: 5
Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
Inbal Avraham‐Davidi, Simon Mages, Johanna Klughammer, et al.
(2025)
Open Access
Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
Inbal Avraham‐Davidi, Simon Mages, Johanna Klughammer, et al.
(2025)
Open Access
Quantitative characterization of tissue states using multiomics and ecological spatial analysis
Daisy Yi Ding, Zeyu Tang, Bokai Zhu, et al.
Nature Genetics (2025)
Open Access
STopover captures spatial colocalization and interaction in the tumor microenvironment using topological analysis in spatial transcriptomics data
Sungwoo Bae, Hyekyoung Lee, Kwon Joong Na, et al.
Genome Medicine (2025) Vol. 17, Iss. 1
Open Access
scDOT: enhancing single-cell RNA-Seq data annotation and uncovering novel cell types through multi-reference integration
Yi-Xuan Xiong, Xiao-Fei Zhang
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 4
CELLama: Foundation Model for Single Cell and Spatial Transcriptomics by Cell Embedding Leveraging Language Model Abilities
Hongyoon Choi, Jeongbin Park, S. K. Kim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Spatiotemporally resolved transcriptome atlas of developing mouse placenta reveals mechanisms of embryonic lethality
Yuting Fu, Xiaoqi Zeng, Yifang Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
DOT: a flexible multi-objective optimization framework for transferring features across single-cell and spatial omics
Arezou Rahimi, Luís A. Vale-Silva, Maria Fälth Savitski, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
Optimal transport for single-cell and spatial omics
Charlotte Bunne, Geoffrey Schiebinger, Andreas Krause, et al.
Nature Reviews Methods Primers (2024) Vol. 4, Iss. 1
Closed Access | Times Cited: 4
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Johanna Klughammer, Daniel L. Abravanel, Åsa Segerstolpe, et al.
Nature Medicine (2024) Vol. 30, Iss. 11, pp. 3236-3249
Open Access | Times Cited: 4
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 4
Anti- and Pro-tumor Functions of Distinct Regulatory T Cell Subsets in Colorectal Cancer
Xiao Huang, Dan Feng, Sneha Mitra, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Charting the tumor microenvironment with spatial profiling technologies
Mattia Toninelli, Grazisa Rossetti, Massimiliano Pagani
Trends in cancer (2023) Vol. 9, Iss. 12, pp. 1085-1096
Open Access | Times Cited: 10
Mapping the topography of spatial gene expression with interpretable deep learning
Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 8
Bering:joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings
Kang Jin, Zuobai Zhang, Ke Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Artificial intelligence in cell annotation for high-resolution RNA sequencing data
Naiqiao Hou, Xinrui Lin, Li Lin, et al.
TrAC Trends in Analytical Chemistry (2024) Vol. 178, pp. 117818-117818
Closed Access | Times Cited: 2
Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations
Alex R. Lederer, Maxine Leonardi, Lorenzo Figà Talamanca, et al.
Nature Methods (2024)
Open Access | Times Cited: 2
Systematic Benchmarking of High-Throughput Subcellular Spatial Transcriptomics Platforms
Pengfei Ren, Rui Zhang, Yunfeng Wang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data
Musu Yuan, Hui Wan, Zihao Wang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 1
Neuronal-class specific molecular cues drive differential myelination in the neocortex
Vahbiz Jokhi, Nuria Domıńguez-Iturza, Kwanho Kim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
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