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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Multi-omic single-cell velocity models epigenome–transcriptome interactions and improves cell fate prediction
Chen Li, Maria Virgilio, Kathleen L. Collins, et al.
Nature Biotechnology (2022) Vol. 41, Iss. 3, pp. 387-398
Open Access | Times Cited: 69

Showing 1-25 of 69 citing articles:

The technological landscape and applications of single-cell multi-omics
Alev Baysoy, Zhiliang Bai, Rahul Satija, et al.
Nature Reviews Molecular Cell Biology (2023) Vol. 24, Iss. 10, pp. 695-713
Open Access | Times Cited: 365
SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks
Carmen Bravo González‐Blas, Seppe De Winter, Gert Hulselmans, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1355-1367
Open Access | Times Cited: 232
Pluripotent stem cell-derived model of the post-implantation human embryo
Bailey A. T. Weatherbee, Carlos W. Gantner, Lisa K. Iwamoto-Stohl, et al.
Nature (2023) Vol. 622, Iss. 7983, pp. 584-593
Open Access | Times Cited: 116
UniTVelo: temporally unified RNA velocity reinforces single-cell trajectory inference
Mingze Gao, Chen Qiao, Yuanhua Huang
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 71
Adult hippocampal neurogenesis in Alzheimer’s disease: A roadmap to clinical relevance
Evgenia Salta, Orly Lazarov, Carlos P. Fitzsimons, et al.
Cell stem cell (2023) Vol. 30, Iss. 2, pp. 120-136
Open Access | Times Cited: 65
Mapping human adult hippocampal neurogenesis with single-cell transcriptomics: Reconciling controversy or fueling the debate?
Giorgia Tosoni, Dilara Ayyildiz, Julien Bryois, et al.
Neuron (2023) Vol. 111, Iss. 11, pp. 1714-1731.e3
Open Access | Times Cited: 38
Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA
Koseki J. Kobayashi-Kirschvink, Charles Comiter, Shreya Gaddam, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 11, pp. 1726-1734
Open Access | Times Cited: 24
The future of rapid and automated single-cell data analysis using reference mapping
Mohammad Lotfollahi, Yuhan Hao, Fabian J. Theis, et al.
Cell (2024) Vol. 187, Iss. 10, pp. 2343-2358
Open Access | Times Cited: 16
Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis
Sneha Mitra, Rohan Malik, Wilfred Wong, et al.
Nature Genetics (2024) Vol. 56, Iss. 4, pp. 627-636
Open Access | Times Cited: 14
Single-nucleus multi-omics of human stem cell-derived islets identifies deficiencies in lineage specification
Punn Augsornworawat, Nathaniel J. Hogrebe, Matthew Ishahak, et al.
Nature Cell Biology (2023) Vol. 25, Iss. 6, pp. 904-916
Open Access | Times Cited: 33
TFvelo: gene regulation inspired RNA velocity estimation
Jiachen Li, Xiaoyong Pan, Ye Yuan, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 9
Epigenetic control of microglial immune responses
Rebekka Scholz, Desirée Brösamle, Xidi Yuan, et al.
Immunological Reviews (2024) Vol. 323, Iss. 1, pp. 209-226
Open Access | Times Cited: 7
Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations
Alex R. Lederer, Maxine Leonardi, Lorenzo Figà Talamanca, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
ChromatinHD connects single-cell DNA accessibility and conformation to gene expression through scale-adaptive machine learning
Wouter Saelens, Olga Pushkarev, Bart Deplancke
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Trajectory inference from single-cell genomics data with a process time model
Meichen Fang, Gennady Gorin, Lior Pachter
PLoS Computational Biology (2025) Vol. 21, Iss. 1, pp. e1012752-e1012752
Open Access
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
Nature (2025)
Open Access
Single-cell and long-read sequencing to enhance modelling of splicing and cell-fate determination
Siyuan Wu, Ulf Schmitz
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 2373-2380
Open Access | Times Cited: 16
Single cell dual-omic atlas of the human developing retina
Zhen Zuo, Xuesen Cheng, Salma Ferdous, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
Benchmarking algorithms for single-cell multi-omics prediction and integration
Yinlei Hu, Siyuan Wan, Yuanhanyu Luo, et al.
Nature Methods (2024)
Closed Access | Times Cited: 4
scKINETICS: inference of regulatory velocity with single-cell transcriptomics data
Cassandra Burdziak, Chujun Zhao, Doron Haviv, et al.
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i394-i403
Open Access | Times Cited: 11
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
Boyan Bonev, Gonçalo Castelo‐Branco, Fei Chen, et al.
Nature Neuroscience (2024) Vol. 27, Iss. 12, pp. 2292-2309
Closed Access | Times Cited: 3
Challenges and Progress in RNA Velocity: Comparative Analysis Across Multiple Biological Contexts
Sarah Ancheta, Leah C. Dorman, Guillaume Le Treut, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
A multi-omic single-cell landscape of cellular diversification in the developing human cerebral cortex
Yuhan Tian, Xia Wu, Songhao Luo, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2173-2189
Open Access | Times Cited: 1
Transgene directed induction of a stem cell-derived human embryo model
Bailey A. T. Weatherbee, Carlos W. Gantner, Riza M. Daza, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Storm: Incorporating transient stochastic dynamics to infer the RNA velocity with metabolic labeling information
Qiangwei Peng, Xiaojie Qiu, Tiejun Li
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
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