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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

DestVI identifies continuums of cell types in spatial transcriptomics data
Romain Lopez, Baoguo Li, Hadas Keren‐Shaul, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 9, pp. 1360-1369
Open Access | Times Cited: 140

Showing 1-25 of 140 citing articles:

Modeling intercellular communication in tissues using spatial graphs of cells
David S. Fischer, Anna C. Schaar, Fabian J. Theis
Nature Biotechnology (2022) Vol. 41, Iss. 3, pp. 332-336
Open Access | Times Cited: 124
IL-1β+ macrophages fuel pathogenic inflammation in pancreatic cancer
Nicoletta Caronni, Federica La Terza, Francesco Maria Vittoria, et al.
Nature (2023) Vol. 623, Iss. 7986, pp. 415-422
Closed Access | Times Cited: 123
A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics
Haoyang Li, Juexiao Zhou, Zhongxiao Li, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 120
Spatial biology of cancer evolution
Zaira Seferbekova, Artem Lomakin, Lucy Yates, et al.
Nature Reviews Genetics (2022) Vol. 24, Iss. 5, pp. 295-313
Closed Access | Times Cited: 117
An integrated single cell and spatial transcriptomic map of human white adipose tissue
Lucas Massier, Jutta Jalkanen, Merve Elmastas, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 83
Lymphatics act as a signaling hub to regulate intestinal stem cell activity
Rachel Niec, Tinyi Chu, Marina Schernthanner, et al.
Cell stem cell (2022) Vol. 29, Iss. 7, pp. 1067-1082.e18
Open Access | Times Cited: 79
Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule maturation
Zhijian Liu, Xiangying Kong, Yanping Long, et al.
Nature Plants (2023) Vol. 9, Iss. 4, pp. 515-524
Open Access | Times Cited: 79
Integrative spatial analysis reveals a multi-layered organization of glioblastoma
Alissa C. Greenwald, Noam Galili Darnell, Rouven Hoefflin, et al.
Cell (2024) Vol. 187, Iss. 10, pp. 2485-2501.e26
Open Access | Times Cited: 75
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 57
Deep learning applications in single-cell genomics and transcriptomics data analysis
Nafiseh Erfanian, A. Ali Heydari, Adib Miraki Feriz, et al.
Biomedicine & Pharmacotherapy (2023) Vol. 165, pp. 115077-115077
Open Access | Times Cited: 54
Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope
Xiaomeng Wan, Jiashun Xiao, Sindy Sing Ting Tam, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 54
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 51
The cycling and aging mouse female reproductive tract at single-cell resolution
Ivana Winkler, Alexander Tolkachov, Fritjof Lammers, et al.
Cell (2024) Vol. 187, Iss. 4, pp. 981-998.e25
Open Access | Times Cited: 29
Evaluating spatially variable gene detection methods for spatial transcriptomics data
Carissa Chen, Hani Jieun Kim, Pengyi Yang
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 26
Spatial transcriptomics in health and disease
Sanjay Jain, Michael T. Eadon
Nature Reviews Nephrology (2024) Vol. 20, Iss. 10, pp. 659-671
Closed Access | Times Cited: 20
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs
Siyu He, Yinuo Jin, Achille Nazaret, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 19
Integrative multi-omics profiling in human decedents receiving pig heart xenografts
Eloi Schmauch, Brian Piening, Maedeh Mohebnasab, et al.
Nature Medicine (2024) Vol. 30, Iss. 5, pp. 1448-1460
Closed Access | Times Cited: 18
Multiscale topology classifies cells in subcellular spatial transcriptomics
Katherine Benjamin, Aneesha Bhandari, Jessica D. Kepple, et al.
Nature (2024) Vol. 630, Iss. 8018, pp. 943-949
Open Access | Times Cited: 17
Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions
Kaishu Mason, Anuja Sathe, Paul R. Hess, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 16
Deep learning in spatially resolved transcriptomics: a comprehensive technical view
Roxana Zahedi, Mohammad Reza Eftekhariyan Ghamsari, Ahmadreza Argha, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 15
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
Nature (2025)
Open Access | Times Cited: 2
Benchmarking and integration of methods for deconvoluting spatial transcriptomic data
Lulu Yan, Xiaoqiang Sun
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 50
A comprehensive comparison on cell-type composition inference for spatial transcriptomics data
Jiawen Chen, Weifang Liu, Tianyou Luo, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 4
Open Access | Times Cited: 47
Application of Deep Learning on Single-Cell RNA Sequencing Data Analysis: A Review
Matthew Brendel, Chang Su, Zilong Bai, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 20, Iss. 5, pp. 814-835
Open Access | Times Cited: 43
Principles and challenges of modeling temporal and spatial omics data
Britta Velten, Oliver Stegle
Nature Methods (2023) Vol. 20, Iss. 10, pp. 1462-1474
Closed Access | Times Cited: 40
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