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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Haplotype-resolved assembly of diploid genomes without parental data
Haoyu Cheng, Erich D. Jarvis, Olivier Fédrigo, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 9, pp. 1332-1335
Open Access | Times Cited: 359

Showing 1-25 of 359 citing articles:

Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
Giulio Formenti, Linelle Abueg, Angelo Brajuka, et al.
Bioinformatics (2022) Vol. 38, Iss. 17, pp. 4214-4216
Open Access | Times Cited: 411
Telomere-to-telomere assembly of diploid chromosomes with Verkko
Mikko Rautiainen, Sergey Nurk, Brian P. Walenz, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 10, pp. 1474-1482
Open Access | Times Cited: 210
Protein-to-genome alignment with miniprot
Heng Li
Bioinformatics (2023) Vol. 39, Iss. 1
Open Access | Times Cited: 181
Semi-automated assembly of high-quality diploid human reference genomes
Erich D. Jarvis, Giulio Formenti, Arang Rhie, et al.
Nature (2022) Vol. 611, Iss. 7936, pp. 519-531
Open Access | Times Cited: 139
compleasm: a faster and more accurate reimplementation of BUSCO
Neng Huang, Heng Li
Bioinformatics (2023) Vol. 39, Iss. 10
Open Access | Times Cited: 131
quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
Yunzhi Lin, Chen Ye, Xingzhu Li, et al.
Horticulture Research (2023) Vol. 10, Iss. 8
Open Access | Times Cited: 107
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation
Mikhail Kolmogorov, Kimberley Billingsley, Mira Mastoras, et al.
Nature Methods (2023) Vol. 20, Iss. 10, pp. 1483-1492
Open Access | Times Cited: 76
Pairtools: from sequencing data to chromosome contacts
Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 70
Chromatin expansion microscopy reveals nanoscale organization of transcription and chromatin
Mark E. Pownall, Liyun Miao, Charles E. Vejnar, et al.
Science (2023) Vol. 381, Iss. 6653, pp. 92-100
Open Access | Times Cited: 63
Genome assembly in the telomere-to-telomere era
Heng Li, Richard Durbin
Nature Reviews Genetics (2024) Vol. 25, Iss. 9, pp. 658-670
Closed Access | Times Cited: 62
Pairtools: From sequencing data to chromosome contacts
Nezar Abdennur, Geoffrey Fudenberg, Ilya M. Flyamer, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 5, pp. e1012164-e1012164
Open Access | Times Cited: 58
Applications of long-read sequencing to Mendelian genetics
Francesco Mastrorosa, Danny E. Miller, Evan E. Eichler
Genome Medicine (2023) Vol. 15, Iss. 1
Open Access | Times Cited: 54
Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph
Haoyu Cheng, Mobin Asri, Julian Lucas, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 967-970
Closed Access | Times Cited: 39
Advancements in long-read genome sequencing technologies and algorithms
Elena Espinosa, Rocí­o Bautista, Rafael Larrosa Jiménez, et al.
Genomics (2024) Vol. 116, Iss. 3, pp. 110842-110842
Open Access | Times Cited: 35
Near-gapless and haplotype-resolved apple genomes provide insights into the genetic basis of rootstock-induced dwarfing
Wei Li, Chong Chu, Hui Li, et al.
Nature Genetics (2024) Vol. 56, Iss. 3, pp. 505-516
Closed Access | Times Cited: 20
Ancient structural variants control sex-specific flowering time morphs in walnuts and hickories
Jeffrey S. Groh, Diane C. Vik, Matthew Davis, et al.
Science (2025) Vol. 387, Iss. 6729
Closed Access | Times Cited: 3
Pangenome graphs and their applications in biodiversity genomics
Simona Secomandi, Guido Roberto Gallo, Riccardo Rossi, et al.
Nature Genetics (2025)
Closed Access | Times Cited: 3
Telomere-to-telomere sheep genome assembly identifies variants associated with wool fineness
Ling-Yun Luo, Hui Wu, Liming Zhao, et al.
Nature Genetics (2025)
Closed Access | Times Cited: 2
Plant pan-genomics and its applications
Junpeng Shi, Zhixi Tian, Jinsheng Lai, et al.
Molecular Plant (2022) Vol. 16, Iss. 1, pp. 168-186
Open Access | Times Cited: 69
Widespread false gene gains caused by duplication errors in genome assemblies
Byung June Ko, Chul Lee, Ju‐Wan Kim, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 48
Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies
Alexander S. Leonard, Danang Crysnanto, Zih‐Hua Fang, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 44
Verkko: telomere-to-telomere assembly of diploid chromosomes
Mikko Rautiainen, Sergey Nurk, Brian P. Walenz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 41
Recent Advances in Assembly of Complex Plant Genomes
Weilong Kong, Yibin Wang, Shengcheng Zhang, et al.
Genomics Proteomics & Bioinformatics (2023) Vol. 21, Iss. 3, pp. 427-439
Open Access | Times Cited: 40
Gaps and complex structurally variant loci in phased genome assemblies
David Porubský, Mitchell R. Vollger, William T. Harvey, et al.
Genome Research (2023) Vol. 33, Iss. 4, pp. 496-510
Open Access | Times Cited: 30
A survey of algorithms for the detection of genomic structural variants from long-read sequencing data
Mian Umair Ahsan, Qian Liu, Jonathan E. Perdomo, et al.
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1143-1158
Open Access | Times Cited: 29
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