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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A Python library for probabilistic analysis of single-cell omics data
Adam Gayoso, Romain Lopez, Galen Xing, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 2, pp. 163-166
Open Access | Times Cited: 425

Showing 1-25 of 425 citing articles:

SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis
Daniel Wendisch, Oliver Dietrich, Tommaso Mari, et al.
Cell (2021) Vol. 184, Iss. 26, pp. 6243-6261.e27
Open Access | Times Cited: 422
scGPT: toward building a foundation model for single-cell multi-omics using generative AI
Haotian Cui, Xiaoming Wang, Hassaan Maan, et al.
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1470-1480
Open Access | Times Cited: 262
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
Stefan Salcher, Gregor Sturm, Lena Horvath, et al.
Cancer Cell (2022) Vol. 40, Iss. 12, pp. 1503-1520.e8
Open Access | Times Cited: 238
Mapping the developing human immune system across organs
Chenqu Suo, Emma Dann, Issac Goh, et al.
Science (2022) Vol. 376, Iss. 6597
Open Access | Times Cited: 230
Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution
Dian Yang, Matthew G. Jones, Santiago Naranjo, et al.
Cell (2022) Vol. 185, Iss. 11, pp. 1905-1923.e25
Open Access | Times Cited: 218
Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma
Assaf Magen, Pauline Hamon, Nathalie Fiaschi, et al.
Nature Medicine (2023) Vol. 29, Iss. 6, pp. 1389-1399
Closed Access | Times Cited: 184
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
Daniel Reichart, Eric L. Lindberg, Henrike Maatz, et al.
Science (2022) Vol. 377, Iss. 6606
Open Access | Times Cited: 160
The scverse project provides a computational ecosystem for single-cell omics data analysis
Isaac Virshup, Danila Bredikhin, Lukas Heumos, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 5, pp. 604-606
Closed Access | Times Cited: 146
DestVI identifies continuums of cell types in spatial transcriptomics data
Romain Lopez, Baoguo Li, Hadas Keren‐Shaul, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 9, pp. 1360-1369
Open Access | Times Cited: 145
Unsupervised spatially embedded deep representation of spatial transcriptomics
Hang Xu, Huazhu Fu, Yahui Long, et al.
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 126
MultiVI: deep generative model for the integration of multimodal data
Tal Ashuach, Mariano I. Gabitto, Rohan V. Koodli, et al.
Nature Methods (2023) Vol. 20, Iss. 8, pp. 1222-1231
Open Access | Times Cited: 122
RNA velocity unraveled
Gennady Gorin, Meichen Fang, Tara Chari, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 9, pp. e1010492-e1010492
Open Access | Times Cited: 117
Comprehensive cell atlas of the first-trimester developing human brain
Emelie Braun, Miri Danan-Gotthold, Lars E. Borm, et al.
Science (2023) Vol. 382, Iss. 6667
Open Access | Times Cited: 102
Polony gels enable amplifiable DNA stamping and spatial transcriptomics of chronic pain
Xiaonan Fu, Li Sun, Runze Dong, et al.
Cell (2022) Vol. 185, Iss. 24, pp. 4621-4633.e17
Open Access | Times Cited: 96
Computational solutions for spatial transcriptomics
Iivari Kleino, Paulina Frolovaitė, Tomi Suomi, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 4870-4884
Open Access | Times Cited: 83
An integrated single cell and spatial transcriptomic map of human white adipose tissue
Lucas Massier, Jutta Jalkanen, Merve Elmastas, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 83
Single-cell transcriptomics of adult macaque hippocampus reveals neural precursor cell populations
Zhao-Zhe Hao, Jia-Ru Wei, Dongchang Xiao, et al.
Nature Neuroscience (2022) Vol. 25, Iss. 6, pp. 805-817
Closed Access | Times Cited: 73
Computational Approaches and Challenges in Spatial Transcriptomics
Shuangsang Fang, Bichao Chen, Yong Zhang, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 21, Iss. 1, pp. 24-47
Open Access | Times Cited: 71
Genetics of human brain development
Yi Zhou, Hongjun Song, Guo‐li Ming
Nature Reviews Genetics (2023) Vol. 25, Iss. 1, pp. 26-45
Closed Access | Times Cited: 68
Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 3, pp. 399-408
Open Access | Times Cited: 61
A Review of Single-Cell RNA-Seq Annotation, Integration, and Cell–Cell Communication
Changde Cheng, Wenan Chen, Hongjian Jin, et al.
Cells (2023) Vol. 12, Iss. 15, pp. 1970-1970
Open Access | Times Cited: 61
Biologically informed deep learning to query gene programs in single-cell atlases
Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, et al.
Nature Cell Biology (2023)
Open Access | Times Cited: 57
Yolk sac cell atlas reveals multiorgan functions during human early development
Issac Goh, Rachel A. Botting, Antony Rose, et al.
Science (2023) Vol. 381, Iss. 6659
Open Access | Times Cited: 55
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 52
SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
Nature Methods (2024)
Open Access | Times Cited: 52
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