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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SignalP 6.0 predicts all five types of signal peptides using protein language models
Felix Teufel, José Juan Almagro Armenteros, Alexander Rosenberg Johansen, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 7, pp. 1023-1025
Open Access | Times Cited: 1556

Showing 1-25 of 1556 citing articles:

InterPro in 2022
Typhaine Paysan-Lafosse, Matthias Blum, Sara Chuguransky, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D418-D427
Open Access | Times Cited: 1548
DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks
Jeppe Hallgren, Konstantinos D. Tsirigos, Mads Damgaard Pedersen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 813
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
Vineet Thumuluri, José Juan Almagro Armenteros, Alexander Rosenberg Johansen, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W228-W234
Open Access | Times Cited: 370
Enhanced rare-earth separation with a metal-sensitive lanmodulin dimer
Joseph A. Mattocks, Jonathan J. Jung, Chi‐Yun Lin, et al.
Nature (2023) Vol. 618, Iss. 7963, pp. 87-93
Open Access | Times Cited: 79
Bilingual Language Model for Protein Sequence and Structure
Michael Heinzinger, Konstantin Weißenow, Joaquin Gomez Sanchez, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 58
TriTrypDB: An integrated functional genomics resource for kinetoplastida
Achchuthan Shanmugasundram, David Starns, Ulrike Böhme, et al.
PLoS neglected tropical diseases (2023) Vol. 17, Iss. 1, pp. e0011058-e0011058
Open Access | Times Cited: 55
Effector Identification in Plant Pathogens
Amelia H. Lovelace, Sara Dorhmi, Michelle T. Hulin, et al.
Phytopathology (2023) Vol. 113, Iss. 4, pp. 637-650
Open Access | Times Cited: 41
Extracellular cytochrome nanowires appear to be ubiquitous in prokaryotes
Diana P. Baquero, Virginija Cvirkaitė‐Krupovič, Shengen Hu, et al.
Cell (2023) Vol. 186, Iss. 13, pp. 2853-2864.e8
Open Access | Times Cited: 37
SARS-CoV-2 viral persistence in lung alveolar macrophages is controlled by IFN-γ and NK cells
Nicolas Huot, Cyril Planchais, Pierre Rosenbaum, et al.
Nature Immunology (2023) Vol. 24, Iss. 12, pp. 2068-2079
Open Access | Times Cited: 36
Ammonia-oxidizing bacteria and archaea exhibit differential nitrogen source preferences
Wei Qin, Stephany P. Wei, Yue Zheng, et al.
Nature Microbiology (2024) Vol. 9, Iss. 2, pp. 524-536
Closed Access | Times Cited: 30
Codon language embeddings provide strong signals for use in protein engineering
Carlos Outeiral, Charlotte M. Deane
Nature Machine Intelligence (2024) Vol. 6, Iss. 2, pp. 170-179
Open Access | Times Cited: 19
Feature Reuse and Scaling: Understanding Transfer Learning with Protein Language Models
Francesca-Zhoufan Li, Ava P. Amini, Yisong Yue, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 18
Plant peptides – redefining an area of ribosomally synthesized and post-translationally modified peptides
Jonathan R. Chekan, Lisa S. Mydy, Michael A. Pasquale, et al.
Natural Product Reports (2024) Vol. 41, Iss. 7, pp. 1020-1059
Open Access | Times Cited: 15
SignalP: The Evolution of a Web Server
Henrik Nielsen, Felix Teufel, Søren Brunak, et al.
Methods in molecular biology (2024), pp. 331-367
Closed Access | Times Cited: 12
TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures
László Dobson, Levente István Szekeres, Csongor Gerdán, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D517-D522
Open Access | Times Cited: 52
Premetazoan Origin of Neuropeptide Signaling
Luis Alfonso Yañez Guerra, Daniel Thiel, Gáspár Jékely
Molecular Biology and Evolution (2022) Vol. 39, Iss. 4
Open Access | Times Cited: 51
TMbed: transmembrane proteins predicted through language model embeddings
Michael Bernhofer, Burkhard Rost
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 48
Genome-centric investigation of bile acid metabolizing microbiota of dairy cows and associated diet-induced functional implications
Limei Lin, Zheng Lai, Yang Huisheng, et al.
The ISME Journal (2022) Vol. 17, Iss. 1, pp. 172-184
Open Access | Times Cited: 45
Novel machine learning approaches revolutionize protein knowledge
Nicola Bordin, Christian Dallago, Michael Heinzinger, et al.
Trends in Biochemical Sciences (2022) Vol. 48, Iss. 4, pp. 345-359
Open Access | Times Cited: 45
Glycoinformatics in the Artificial Intelligence Era
Daniel Bojar, Frédérique Lisacek
Chemical Reviews (2022) Vol. 122, Iss. 20, pp. 15971-15988
Open Access | Times Cited: 42
A guide to current methodology and usage of reverse vaccinology towardsin silicovaccine discovery
Stephen J. Goodswen, Paul Kennedy, John Ellis
FEMS Microbiology Reviews (2023) Vol. 47, Iss. 2
Open Access | Times Cited: 35
Dirigent gene editing of gossypol enantiomers for toxicity-depleted cotton seeds
Jia‐Ling Lin, Xin Fang, Jianxu Li, et al.
Nature Plants (2023) Vol. 9, Iss. 4, pp. 605-615
Closed Access | Times Cited: 31
Golgi-IP, a tool for multimodal analysis of Golgi molecular content
Rotimi Fasimoye, Wentao Dong, Raja Sekhar Nirujogi, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 20
Open Access | Times Cited: 30
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models
Kamil Kamiński, Jan Ludwiczak, Kamil Pawlicki, et al.
Bioinformatics (2023) Vol. 39, Iss. 10
Open Access | Times Cited: 29
Structural analysis and architectural principles of the bacterial amyloid curli
Mike Sleutel, Brajabandhu Pradhan, Alexander N. Volkov, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 27
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