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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Visualizing structure and transitions in high-dimensional biological data
Kevin R. Moon, David van Dijk, Zheng Wang, et al.
Nature Biotechnology (2019) Vol. 37, Iss. 12, pp. 1482-1492
Open Access | Times Cited: 798

Showing 1-25 of 798 citing articles:

UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction
Leland McInnes, John J. Healy
arXiv (Cornell University) (2018)
Open Access | Times Cited: 6125
A guide to machine learning for biologists
Joe G. Greener, Shaun M. Kandathil, Lewis Moffat, et al.
Nature Reviews Molecular Cell Biology (2021) Vol. 23, Iss. 1, pp. 40-55
Open Access | Times Cited: 1156
Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization
Chiara Baccin, Jude Al-Sabah, Lars Velten, et al.
Nature Cell Biology (2019) Vol. 22, Iss. 1, pp. 38-48
Open Access | Times Cited: 664
scMC learns biological variation through the alignment of multiple single-cell genomics datasets
Lihua Zhang, Qing Nie
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 643
Multimodal biomedical AI
Julián Acosta, Guido J. Falcone, Pranav Rajpurkar, et al.
Nature Medicine (2022) Vol. 28, Iss. 9, pp. 1773-1784
Open Access | Times Cited: 514
Best practices for single-cell analysis across modalities
Lukas Heumos, Anna C. Schaar, Christopher Lance, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 550-572
Open Access | Times Cited: 436
Blastocyst-like structures generated from human pluripotent stem cells
Leqian Yu, Yulei Wei, Jialei Duan, et al.
Nature (2021) Vol. 591, Iss. 7851, pp. 620-626
Closed Access | Times Cited: 362
Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease
Seyhan Yazar, José Alquicira-Hernández, Kristof Wing, et al.
Science (2022) Vol. 376, Iss. 6589
Closed Access | Times Cited: 307
Emergence of a High-Plasticity Cell State during Lung Cancer Evolution
Nemanja D. Marjanovic, Matan Hofree, Jason E. Chan, et al.
Cancer Cell (2020) Vol. 38, Iss. 2, pp. 229-246.e13
Open Access | Times Cited: 279
scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses
Juexin Wang, Anjun Ma, Yuzhou Chang, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 270
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes
Neal G. Ravindra, Mia Madel Alfajaro, Victor Gasque, et al.
PLoS Biology (2021) Vol. 19, Iss. 3, pp. e3001143-e3001143
Open Access | Times Cited: 241
Plasticity of Epididymal Adipose Tissue in Response to Diet-Induced Obesity at Single-Nucleus Resolution
Anitta Kinga Sárvári, Elvira Laila Van Hauwaert, Lasse K. Markussen, et al.
Cell Metabolism (2020) Vol. 33, Iss. 2, pp. 437-453.e5
Open Access | Times Cited: 232
Chemical reprogramming of human somatic cells to pluripotent stem cells
Jingyang Guan, Guan Wang, Jinlin Wang, et al.
Nature (2022) Vol. 605, Iss. 7909, pp. 325-331
Closed Access | Times Cited: 231
Regenerative potential of prostate luminal cells revealed by single-cell analysis
Wouter R. Karthaus, Matan Hofree, Danielle Choi, et al.
Science (2020) Vol. 368, Iss. 6490, pp. 497-505
Open Access | Times Cited: 229
A reservoir of stem-like CD8 + T cells in the tumor-draining lymph node preserves the ongoing antitumor immune response
Kelli A. Connolly, Manik Kuchroo, Aarthi Venkat, et al.
Science Immunology (2021) Vol. 6, Iss. 64
Open Access | Times Cited: 217
CytoMAP: A Spatial Analysis Toolbox Reveals Features of Myeloid Cell Organization in Lymphoid Tissues
Caleb Stoltzfus, Jakub Filipek, Benjamin H. Gern, et al.
Cell Reports (2020) Vol. 31, Iss. 3, pp. 107523-107523
Open Access | Times Cited: 190
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq
Bo Li, Joshua Gould, Yiming Yang, et al.
Nature Methods (2020) Vol. 17, Iss. 8, pp. 793-798
Open Access | Times Cited: 188
Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19
Aaron J. Wilk, Madeline Lee, Bei Wei, et al.
The Journal of Experimental Medicine (2021) Vol. 218, Iss. 8
Open Access | Times Cited: 181
Parametric UMAP Embeddings for Representation and Semisupervised Learning
Tim Sainburg, Leland McInnes, Timothy Q. Gentner
Neural Computation (2021), pp. 1-27
Open Access | Times Cited: 161
Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis
Madhav Mantri, Gaetano J. Scuderi, Roozbeh Abedini‐Nassab, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 156
Quantifying the effect of experimental perturbations at single-cell resolution
Daniel B. Burkhardt, Jay S. Stanley, Alexander Tong, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 5, pp. 619-629
Open Access | Times Cited: 148
Developmental trajectory of prehematopoietic stem cell formation from endothelium
Qin Zhu, Peng Gao, Joanna Tober, et al.
Blood (2020) Vol. 136, Iss. 7, pp. 845-856
Open Access | Times Cited: 144
Multi-omics integration in the age of million single-cell data
Zhen Miao, Benjamin D. Humphreys, Andrew P. McMahon, et al.
Nature Reviews Nephrology (2021) Vol. 17, Iss. 11, pp. 710-724
Open Access | Times Cited: 140
Large-scale integration of single-cell transcriptomic data captures transitional progenitor states in mouse skeletal muscle regeneration
David W. McKellar, Lauren D. Walter, Leo T. Song, et al.
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 139
A complex systems approach to aging biology
Alan A. Cohen, Luigi Ferrucci, Tamás Fülöp, et al.
Nature Aging (2022) Vol. 2, Iss. 7, pp. 580-591
Open Access | Times Cited: 117
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