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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Cell-type-directed design of synthetic enhancers
Ibrahim Ihsan Taskiran, Katina I. Spanier, Hannah Dickmänken, et al.
Nature (2023) Vol. 626, Iss. 7997, pp. 212-220
Open Access | Times Cited: 66

Showing 1-25 of 66 citing articles:

Deciphering the multi-scale, quantitative cis-regulatory code
Seungsoo Kim, Joanna Wysocka
Molecular Cell (2023) Vol. 83, Iss. 3, pp. 373-392
Open Access | Times Cited: 156
Diffusion models in bioinformatics and computational biology
Zhiye Guo, Jian Liu, Yanli Wang, et al.
Nature Reviews Bioengineering (2023) Vol. 2, Iss. 2, pp. 136-154
Open Access | Times Cited: 44
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
Jean‐Benoît Lalanne, Samuel G. Regalado, Silvia Domcke, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 983-993
Open Access | Times Cited: 18
Machine-guided design of cell-type-targeting cis-regulatory elements
Sager J. Gosai, Rodrigo Castro, Natalia Fuentes, et al.
Nature (2024) Vol. 634, Iss. 8036, pp. 1211-1220
Open Access | Times Cited: 17
Enhancer-driven cell type comparison reveals similarities between the mammalian and bird pallium
Nikolai Hecker, Niklas Kempynck, David Mauduit, et al.
Science (2025) Vol. 387, Iss. 6735
Open Access | Times Cited: 2
Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo
Bernardo P. de Almeida, Christoph Schaub, Michaela Pagani, et al.
Nature (2023) Vol. 626, Iss. 7997, pp. 207-211
Open Access | Times Cited: 38
Symbolic recording of signalling and cis-regulatory element activity to DNA
Wei Chen, Junhong Choi, Xiaoyi Li, et al.
Nature (2024) Vol. 632, Iss. 8027, pp. 1073-1081
Open Access | Times Cited: 14
Multiplexed single-cell characterization of alternative polyadenylation regulators
Madeline H. Kowalski, Hans‐Hermann Wessels, Johannes Linder, et al.
Cell (2024) Vol. 187, Iss. 16, pp. 4408-4425.e23
Closed Access | Times Cited: 13
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
Yoav Ben‐Simon, Marcus Hooper, Sujatha Narayan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 11
Cancer drug-tolerant persister cells: from biological questions to clinical opportunities
Mariangela Russo, Mengnuo Chen, Elisa Mariella, et al.
Nature reviews. Cancer (2024) Vol. 24, Iss. 10, pp. 694-717
Closed Access | Times Cited: 11
The evolution of developmental biology through conceptual and technological revolutions
Prisca Liberali, Alexander F. Schier
Cell (2024) Vol. 187, Iss. 14, pp. 3461-3495
Open Access | Times Cited: 10
ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants
Anusri Pampari, Anna Shcherbina, Evgeny Z. Kvon, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
In silico discovery of repetitive elements as key sequence determinants of 3D genome folding
Laura M. Gunsalus, Michael J. Keiser, Katherine S. Pollard
Cell Genomics (2023) Vol. 3, Iss. 10, pp. 100410-100410
Open Access | Times Cited: 17
Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex
Chengyu Deng, Sean Whalen, Marilyn Steyert, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 16
Iterative deep learning-design of human enhancers exploits condensed sequence grammar to achieve cell type-specificity
Christopher Yin, Sebastian M. Castillo-Hair, Gun Woo Byeon, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Rewriting regulatory DNA to dissect and reprogram gene expression
Gabriella E. Martyn, Michael T. Montgomery, H. Spencer Jones, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
Active learning of enhancers and silencers in the developing neural retina
Ryan Z. Friedman, Avinash Ramu, Sara Lichtarge, et al.
Cell Systems (2025), pp. 101163-101163
Open Access
Mechanisms of enhancer‐driven oncogene activation
Joyce Vriend, Ruud Delwel, Dorien Pastoors
International Journal of Cancer (2025)
Open Access
Improving the generalization of protein expression models with mechanistic sequence information
Yuxin Shen, Grzegorz Kudla, Diego A. Oyarzún
Nucleic Acids Research (2025) Vol. 53, Iss. 3
Open Access
Enhancer‐dependent gene regulation in space, time, and malignancies
Beat Blum, Victoria Dachtler, Angelika Feldmann
International Journal of Cancer (2025)
Open Access
Modeling and designing enhancers by introducing and harnessing transcription factor binding units
Jiaqi Li, Pengcheng Zhang, Xi Xi, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Modelling and design of transcriptional enhancers
Seppe De Winter, Vasileios Konstantakos, Stein Aerts
Nature Reviews Bioengineering (2025)
Closed Access
Enhancer Elements in Plants: Genomic Context and Biological Functions
Hongwoo Lee, Dong Hyeon Kang, Pil Joon Seo
Journal of Plant Biology (2025)
Closed Access
OnTarget: in silico design of MiniPromoters for targeted delivery of expression
Oriol Fornés, Tamar V. Av‐Shalom, Andrea J. Korecki, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W379-W386
Open Access | Times Cited: 11
Logical design of synthetic cis-regulatory DNA for genetic tracing of cell identities and state changes
Carlos Company, Matthias Jürgen Schmitt, Yuliia Dramaretska, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
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